Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0068531 Lupinus albus HOM05D003155 ORTHO05D012487 6.4e-16 86.3 43 100.0
arahy.Tifrunner.gnm1.ann1.DJPQ45 Arachis hypogaea HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
arahy.Tifrunner.gnm1.ann1.PM89VL Arachis hypogaea HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
Glyma.05G192900 Glycine max HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
Glyma.08G001000 Glycine max HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
Lj5g0009987 Lotus japonicus HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
Lalb_Chr08g0238231 Lupinus albus HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
Medtr8g093860 Medicago truncatula HOM05D003155 ORTHO05D004342 1.0e-13 79.0 40 95.0
Phvul.002G273500 Phaseolus vulgaris HOM05D003155 ORTHO05D004342 2.3e-13 77.8 40 92.5
TPR.G37349 Trifolium pratense HOM05D003155 ORTHO05D004342 2.3e-13 77.8 40 92.5
VMungo0251G2281 Vigna mungo HOM05D003155 ORTHO05D004342 2.3e-13 77.8 40 92.5
Atru.chr10.1937 Acer truncatum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Actinidia11005 Actinidia chinensis HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Aa31sc33G80 Aethionema arabicum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
AagrBONN_evm.TU.Sc2ySwM_368.880 Anthoceros agrestis HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
MSTRG.7527 Avicennia marina HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
CANSAT25G1273 Cannabis sativa HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
CAN.G405.2 Capsicum annuum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
CAN.G630.85 Capsicum annuum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Cpa.g.sc8.158 Carica papaya HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
CDE05G1659 Ceratophyllum demersum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
CDE11G0169 Ceratophyllum demersum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Ca_14922_v3 Cicer arietinum L. HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 90.0
Ca_22781_v3 Cicer arietinum L. HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 90.0
ClCG01G001560 Citrullus lanatus HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
MELO3C005781.2 Cucumis melo HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
CsaV3_5G001710 Cucumis sativus L. HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
DCAR_024227 Daucus carota HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Hma1.2p1_1785F.1_g302280 Hydrangea macrophylla HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Nitab4.5_0000317g0060 Nicotiana tabacum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Os03g0831500 Oryza sativa ssp. japonica HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Sp5g07410 Schrenkiella parvula HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Sed0004341 Sechium edule HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
Solyc04g058090.3 Solanum lycopersicum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
PGSC0003DMG400023032 Solanum tuberosum HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
SGA_v2.0_scaffold1G00231 Striga asiatica HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
SGA_v2.0_scaffold223G42841 Striga asiatica HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
THA.LOC104817470 Tarenaya hassleriana HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
TWI09G1633 Tripterygium wilfordii HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
vmacro12338 Vaccinium macrocarpon HOM05D003155 ORTHO05D004342 6.6e-13 76.3 40 92.5
ATR0693G061 Amborella trichopoda HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
AL5G36130 Arabidopsis lyrata HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
AT3G55010 Arabidopsis thaliana HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
Carub.0005s2164 Capsella rubella HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
ECA246G1648 Erigeron canadensis HOM05D003155 ORTHO05D001887 8.6e-13 75.9 40 90.0
ECA248G1812 Erigeron canadensis HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
HanXRQChr06g0174841 Helianthus annuus HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
HanXRQChr17g0540071 Helianthus annuus HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
SalBow2G2017 Salvia bowleyana HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
SalBow8G2165 Salvia bowleyana HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 90.0
Sopen04g025920 Solanum pennellii HOM05D003155 ORTHO05D004342 8.6e-13 75.9 40 92.5
Lj3A1064T100 Lonicera japonica HOM05D003155 ORTHO05D004342 1.1e-12 75.5 40 87.5
FvH4_1g23040 Fragaria vesca HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
FAN19G1072 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
FAN23G2124 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
FAN26G2094 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
FAN28G3015 Fragaria x ananassa HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
Lj4g0014336 Lotus japonicus HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
MD08G1194300 Malus domestica HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
MD08G1194700 Malus domestica HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
MD15G1382400 Malus domestica HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
Nitab4.5_0002557g0030 Nicotiana tabacum HOM05D003155 ORTHO05D004342 1.5e-12 75.1 40 90.0
Ah.01g001460 Amaranthus hybridus HOM05D003155 ORTHO05D003938 1.9e-12 74.7 40 90.0
AagrBONN_evm.TU.Sc2ySwM_344.1369 Anthoceros agrestis HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Aqoxy5G00145 Aquilegia oxysepala HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Cfa005833 Carpinus fangiana HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Cfa005838 Carpinus fangiana HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
CiPaw.07G115200 Carya illinoinensis HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
AUR62010120 Chenopodium quinoa HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
AUR62013115 Chenopodium quinoa HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Cc11_g04240 Coffea canephora HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
COL.COLO4_23262 Corchorus olitorius HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Haze_05010 Corylus avellana HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Dinv10072 Davidia involucrata HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Dinv33099 Davidia involucrata HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Duzib138G0641 Durio zibethinus HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Eucgr.A02767 Eucalyptus grandis HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Eucgr.L02454 Eucalyptus grandis HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Eucgr.L03298 Eucalyptus grandis HOM05D003155 ORTHO05D012487 1.9e-12 74.7 40 90.0
Gohir.A11G111100 Gossypium hirsutum HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Gohir.D11G116300 Gossypium hirsutum HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Gorai.007G124500 Gossypium raimondii HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
MBI19_g29997_MAGBIO Magnolia biondii HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Manes.01G225900 Manihot esculenta HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Nn3g21630 Nelumbo nucifera HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Oeu040091.1 Olea europaea HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Peaxi162Scf00591g00412 Petunia axillaris HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Potri.002G198600 Populus trichocarpa HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Potri.014G123000 Populus trichocarpa HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Sabra02G0159100 Salix brachista HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Hund00057 Selenicereus undatus HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Hund06387 Selenicereus undatus HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Sc08g0003390 Simmondsia chinensis HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
Thecc.01G310300 Theobroma cacao HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
vmacro23398 Vaccinium macrocarpon HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
GSVIVG01011409001 Vitis vinifera HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
GSVIVG01028086001 Vitis vinifera HOM05D003155 ORTHO05D004342 1.9e-12 74.7 40 90.0
EL10Ac9g21469 Beta vulgaris HOM05D003155 ORTHO05D004342 2.5e-12 74.3 40 87.5
CARHR165020 Cardamine hirsuta HOM05D003155 ORTHO05D004342 2.5e-12 74.3 40 87.5
CiPaw.13G147200 Carya illinoinensis HOM05D003155 ORTHO05D004342 2.5e-12 74.3 40 87.5
Migut.M01874 Erythranthe guttata HOM05D003155 ORTHO05D004342 2.5e-12 74.3 40 87.5
Lsat_1_v5_gn_3_29341 Lactuca sativa HOM05D003155 ORTHO05D004342 2.5e-12 74.3 40 87.5
Manes.05G001800 Manihot esculenta HOM05D003155 ORTHO05D004342 2.5e-12 74.3 40 87.5
PGR066G0004 Punica granatum HOM05D003155 ORTHO05D004342 3.3e-12 73.9 40 87.5
PGR142G1043 Punica granatum HOM05D003155 ORTHO05D004342 3.3e-12 73.9 40 87.5
Zm00001eb284260 Zea mays HOM05D003155 ORTHO05D004342 3.3e-12 73.9 40 90.0
BcaB02g07704 Brassica carinata HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 4.3e-12 73.6 40 90.0
BcaC08g44717 Brassica carinata HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
BcaNung04653 Brassica carinata HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
A07p22400 Brassica napus HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
A09p48030 Brassica napus HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
C06p22560 Brassica napus HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
C08p30250 Brassica napus HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
BolC6t37446H Brassica oleracea HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
BolC8t50632H Brassica oleracea HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
BraA07t29916Z Brassica rapa HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
BraA09t40256Z Brassica rapa HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
Thhalv10010436m.g Eutrema salsugineum HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
PSO541G5346 Papaver somniferum HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 87.5
PSO675G7447 Papaver somniferum HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 87.5
Peaxi162Scf00066g00524 Petunia axillaris HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
Prupe.1G528600 Prunus persica HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 87.5
RcHm_v2.0_Chr2g0117751 Rosa chinensis HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 87.5
SEGI_27039 Sequoiadendron giganteum HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 87.5
TAR362G0238 Trochodendron aralioides HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
TAR362G0957 Trochodendron aralioides HOM05D003155 ORTHO05D004342 4.3e-12 73.6 40 90.0
unitig_37.g12904 Utricularia gibba HOM05D003155 ORTHO05D004342 4.3e-12 73.6 41 82.9
CSS0028730 Camellia sinensis var. sinensis HOM05D003155 ORTHO05D004342 5.6e-12 73.2 40 87.5
Cc00_g15210 Coffea canephora HOM05D003155 ORTHO05D004342 5.6e-12 73.2 40 87.5
COL.COLO4_33959 Corchorus olitorius HOM05D003155 ORTHO05D012487 5.6e-12 73.2 40 87.5
CARHR165030 Cardamine hirsuta HOM05D003155 ORTHO05D004342 9.5e-12 72.4 38 92.1
PGR119G0649 Punica granatum HOM05D003155 ORTHO05D004342 9.5e-12 72.4 40 87.5
Thhalv10018710m.g Eutrema salsugineum HOM05D003155 ORTHO05D004342 2.8e-11 70.9 40 82.5
MD08G1193800 Malus domestica HOM05D003155 ORTHO05D004342 2.8e-11 70.9 39 87.2
MD08G1194800 Malus domestica HOM05D003155 ORTHO05D004342 2.8e-11 70.9 39 87.2
MD08G1195100 Malus domestica HOM05D003155 ORTHO05D004342 2.8e-11 70.9 39 87.2
Zm00001eb115440 Zea mays HOM05D003155 ORTHO05D004342 2.8e-11 70.9 40 87.5
C02p25090 Brassica napus HOM05D003155 ORTHO05D012487 6.2e-11 69.7 40 87.5
BolC2t08589H Brassica oleracea HOM05D003155 ORTHO05D012487 6.2e-11 69.7 40 87.5
CBR_g16871 Chara braunii HOM05D003155 ORTHO05D004342 8.1e-11 69.3 40 85.0
Oeu008950.2 Olea europaea HOM05D003155 ORTHO05D004342 8.1e-11 69.3 43 83.7
Mapoly0003s0273 Marchantia polymorpha HOM05D003155 ORTHO05D004342 1.1e-10 68.9 40 80.0
TPR.G22009 Trifolium pratense HOM05D003155 ORTHO05D012487 1.1e-10 68.9 40 82.5
HPP92_001922 Vanilla planifolia HOM05D003155 ORTHO05D004342 1.1e-10 68.9 40 85.0
Zm00001eb350100 Zea mays HOM05D003155 ORTHO05D012487 1.1e-10 68.9 40 85.0
BcaC03g14975 Brassica carinata HOM05D003155 ORTHO05D012487 1.4e-10 68.6 38 89.5
MD15G1382500 Malus domestica HOM05D003155 ORTHO05D004342 1.4e-10 68.6 39 84.6
SMO116G0007 Selaginella moellendorffii HOM05D003155 ORTHO05D004342 1.8e-10 68.2 40 82.5
RcHm_v2.0_Chr7g0218451 Rosa chinensis HOM05D003155 ORTHO05D004342 4.0e-10 67.0 41 80.5
Pp3c5_3030 Physcomitrium patens HOM05D003155 ORTHO05D004342 6.8e-10 66.2 40 77.5
Lsat_1_v5_gn_8_28960 Lactuca sativa HOM05D003155 ORTHO05D004342 8.9e-10 65.9 40 77.5
CARHR047350 Cardamine hirsuta HOM05D003155 ORTHO05D012487 1.5e-09 65.1 40 77.5
MD05G1254600 Malus domestica HOM05D003155 ORTHO05D004342 1.5e-09 65.1 39 79.5
TPR.G31811 Trifolium pratense HOM05D003155 ORTHO05D004342 1.5e-09 65.1 40 77.5
Cre07.g318750 Chlamydomonas reinhardtii HOM05D003155 ORTHO05D004342 2.0e-09 64.7 40 75.0
Lsat_1_v5_gn_4_184420 Lactuca sativa HOM05D003155 ORTHO05D012487 2.6e-09 64.3 40 77.5
Lsat_1_v5_gn_7_86280 Lactuca sativa HOM05D003155 ORTHO05D012487 2.6e-09 64.3 40 75.0
SMO232G0073 Selaginella moellendorffii HOM05D003155 ORTHO05D004342 2.6e-09 64.3 40 72.5
CDE05G2880 Ceratophyllum demersum HOM05D003155 ORTHO05D004342 3.4e-09 63.9 31 96.8
Pp3c6_25750 Physcomitrium patens HOM05D003155 ORTHO05D004342 3.4e-09 63.9 40 75.0
PRCOL_00001570 Prasinoderma coloniale HOM05D003155 ORTHO05D004342 8.4e-08 59.3 40 72.5
Sp5g14230 Schrenkiella parvula HOM05D003155 ORTHO05D004342 2.4e-07 57.8 37 73.0
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 5.4e-07 56.6 40 65.0
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.2e-06 55.5 40 57.5
MD08G1195000 Malus domestica HOM05D003155 ORTHO05D004342 4.6e-06 53.5 73 46.6
Migut.H01339 Erythranthe guttata HOM05D003155 ORTHO05D012487 7.8e-06 52.8 32 78.1


User provided reference genes

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