Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 5.2e-30 133.7 64 100.0
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 1.3e-20 102.4 53 90.6
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 2.2e-20 101.7 54 85.2
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 2.9e-20 101.3 53 86.8
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 4.9e-20 100.5 61 77.0
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 5.4e-19 97.1 53 83.0
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 7.0e-19 96.7 53 84.9
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.6e-18 95.5 53 84.9
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 2.0e-18 95.1 53 83.0
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 2.0e-18 95.1 53 83.0
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 2.7e-18 94.7 53 83.0
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 2.7e-18 94.7 53 81.1
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 2.7e-18 94.7 53 81.1
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 3.5e-18 94.4 51 80.4
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 4.6e-18 94.0 51 78.4
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 5.9e-18 93.6 53 83.0
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 5.9e-18 93.6 51 80.4
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 7.8e-18 93.2 53 83.0
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.8e-18 93.2 53 83.0
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.8e-18 93.2 53 83.0
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.0e-17 92.8 53 83.0
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.3e-17 92.4 53 81.1
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 2.3e-17 91.7 53 77.4
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.3e-17 91.7 52 78.8
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 2.3e-17 91.7 54 79.6
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 3.0e-17 91.3 53 79.2
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 3.9e-17 90.9 53 77.4
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 5.0e-17 90.5 55 74.5
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 5.0e-17 90.5 53 77.4
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 5.0e-17 90.5 51 78.4
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 6.6e-17 90.1 53 77.4
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 6.6e-17 90.1 53 75.5
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 1.1e-16 89.4 53 79.2
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.5e-16 89.0 53 75.5
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 1.5e-16 89.0 51 76.5
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 1.9e-16 88.6 53 79.2
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 2.5e-16 88.2 49 81.6
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 3.3e-16 87.8 45 84.4
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 4.3e-16 87.4 49 81.6
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 4.3e-16 87.4 48 83.3
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 4.3e-16 87.4 49 79.6
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 4.3e-16 87.4 49 81.6
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 4.3e-16 87.4 53 75.5
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 5.6e-16 87.0 49 79.6
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 5.6e-16 87.0 49 79.6
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 5.6e-16 87.0 49 79.6
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 5.6e-16 87.0 48 83.3
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 5.6e-16 87.0 49 77.6
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 7.3e-16 86.7 49 81.6
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 9.5e-16 86.3 53 71.7
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 9.5e-16 86.3 51 76.5
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 9.5e-16 86.3 53 75.5
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 9.5e-16 86.3 51 76.5
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 1.2e-15 85.9 49 79.6
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.2e-15 85.9 52 73.1
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.6e-15 85.5 52 73.1
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 1.6e-15 85.5 51 74.5
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 2.1e-15 85.1 53 69.8
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 2.8e-15 84.7 49 79.6
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 2.8e-15 84.7 51 74.5
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 2.8e-15 84.7 49 79.6
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.8e-15 84.7 49 81.6
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 2.8e-15 84.7 53 69.8
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 3.6e-15 84.3 53 69.8
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 4.7e-15 84.0 51 72.5
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 4.7e-15 84.0 51 70.6
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 6.2e-15 83.6 49 77.6
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 6.2e-15 83.6 51 74.5
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 6.2e-15 83.6 53 71.7
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 6.2e-15 83.6 60 63.3
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 8.0e-15 83.2 49 75.5
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 1.0e-14 82.8 52 67.3
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 1.0e-14 82.8 53 73.6
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 1.4e-14 82.4 51 68.6
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 1.4e-14 82.4 51 68.6
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 1.4e-14 82.4 51 70.6
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 1.4e-14 82.4 51 72.5
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.4e-14 82.4 51 68.6
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.8e-14 82.0 47 76.6
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.8e-14 82.0 51 70.6
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 3.1e-14 81.3 53 67.9
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 3.1e-14 81.3 51 70.6
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 3.1e-14 81.3 53 67.9
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 3.1e-14 81.3 52 65.4
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 4.0e-14 80.9 49 73.5
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 4.0e-14 80.9 55 67.3
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 5.2e-14 80.5 43 81.4
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 6.8e-14 80.1 49 71.4
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.8e-14 80.1 49 73.5
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 6.8e-14 80.1 49 73.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 6.8e-14 80.1 49 73.5
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 6.8e-14 80.1 52 67.3
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 6.8e-14 80.1 51 66.7
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 8.9e-14 79.7 51 72.5
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 8.9e-14 79.7 51 64.7
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 8.9e-14 79.7 51 66.7
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 8.9e-14 79.7 51 68.6
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 1.5e-13 79.0 51 68.6
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 1.5e-13 79.0 51 68.6
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 1.5e-13 79.0 54 68.5
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.6e-13 78.2 51 68.6
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 4.4e-13 77.4 48 70.8
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 4.4e-13 77.4 49 67.3
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 5.8e-13 77.0 49 69.4
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 5.8e-13 77.0 49 67.3
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.2e-12 75.1 51 64.7
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 2.9e-12 74.7 56 57.1
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 3.7e-12 74.3 49 63.3
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 3.7e-12 74.3 49 63.3
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 1.1e-11 72.8 49 61.2
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.7e-09 65.5 39 76.9
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 3.9e-09 64.3 48 62.5
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.4e-06 55.8 45 53.3


User provided reference genes

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