Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 3.8e-41 171.0 84 100.0
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 3.5e-18 94.7 62 74.2
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 3.3e-16 88.2 48 79.2
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 7.3e-16 87.0 48 79.2
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 9.5e-16 86.7 48 79.2
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 3.6e-15 84.7 47 78.7
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 3.6e-15 84.7 48 77.1
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 3.6e-15 84.7 48 75.0
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 6.2e-15 84.0 53 71.7
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.2e-15 84.0 53 71.7
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.2e-15 84.0 53 71.7
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.2e-15 84.0 53 71.7
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 8.1e-15 83.6 48 75.0
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 8.1e-15 83.6 48 75.0
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-14 83.2 48 75.0
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 1.1e-14 83.2 47 76.6
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 1.4e-14 82.8 48 75.0
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.4e-14 82.8 48 75.0
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 1.8e-14 82.4 48 72.9
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.8e-14 82.4 48 72.9
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 1.8e-14 82.4 53 69.8
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.8e-14 82.4 48 75.0
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 2.4e-14 82.0 48 75.0
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 2.4e-14 82.0 52 67.3
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 3.1e-14 81.6 48 70.8
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.1e-14 81.6 48 70.8
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 3.1e-14 81.6 54 66.7
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 4.0e-14 81.3 45 75.6
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 4.0e-14 81.3 48 72.9
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 5.2e-14 80.9 48 70.8
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 5.2e-14 80.9 48 75.0
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 5.2e-14 80.9 64 59.4
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 6.8e-14 80.5 49 71.4
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 6.8e-14 80.5 49 71.4
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 6.8e-14 80.5 50 68.0
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 6.8e-14 80.5 54 64.8
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 1.5e-13 79.3 59 64.4
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.5e-13 79.3 45 73.3
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.5e-13 79.3 48 70.8
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 2.0e-13 79.0 64 57.8
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 2.0e-13 79.0 61 59.0
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 2.6e-13 78.6 70 58.6
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 2.6e-13 78.6 47 72.3
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 3.4e-13 78.2 68 54.4
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 3.4e-13 78.2 44 75.0
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 3.4e-13 78.2 44 75.0
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 3.4e-13 78.2 48 72.9
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 3.4e-13 78.2 44 75.0
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 4.4e-13 77.8 48 72.9
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 4.4e-13 77.8 48 72.9
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 4.4e-13 77.8 48 68.8
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 4.4e-13 77.8 45 75.6
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 5.8e-13 77.4 48 72.9
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 5.8e-13 77.4 48 72.9
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 5.8e-13 77.4 48 72.9
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 5.8e-13 77.4 48 72.9
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 5.8e-13 77.4 52 61.5
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 9.9e-13 76.6 48 72.9
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 9.9e-13 76.6 48 68.8
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 9.9e-13 76.6 52 65.4
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 9.9e-13 76.6 45 71.1
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.3e-12 76.3 58 60.3
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 1.3e-12 76.3 48 70.8
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.7e-12 75.9 47 70.2
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.7e-12 75.9 48 64.6
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 2.2e-12 75.5 48 70.8
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 2.2e-12 75.5 48 70.8
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 2.2e-12 75.5 48 70.8
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 2.2e-12 75.5 45 68.9
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.8e-12 74.7 45 68.9
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 4.9e-12 74.3 45 71.1
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 4.9e-12 74.3 55 60.0
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 4.9e-12 74.3 48 64.6
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 8.4e-12 73.6 62 56.5
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.1e-11 73.2 48 64.6
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.4e-11 72.0 45 66.7
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 3.2e-11 71.6 45 66.7
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 3.2e-11 71.6 47 63.8
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 4.1e-11 71.2 48 62.5
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 4.1e-11 71.2 58 53.4
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 5.4e-11 70.9 43 65.1
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 7.1e-11 70.5 45 64.4
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 7.1e-11 70.5 49 59.2
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 7.1e-11 70.5 43 69.8
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 7.1e-11 70.5 43 69.8
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 7.1e-11 70.5 48 62.5
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 9.2e-11 70.1 48 62.5
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 1.2e-10 69.7 57 57.9
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.2e-10 69.7 48 62.5
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.2e-10 69.7 43 69.8
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 1.6e-10 69.3 49 61.2
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.6e-10 69.3 48 62.5
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 2.7e-10 68.6 49 59.2
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 2.7e-10 68.6 43 65.1
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 4.6e-10 67.8 54 57.4
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 7.8e-10 67.0 49 57.1
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 1.0e-09 66.6 45 60.0
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 3.0e-09 65.1 49 53.1
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 3.0e-09 65.1 49 53.1
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 3.0e-09 65.1 49 53.1
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 3.0e-09 65.1 48 58.3
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 2.5e-08 62.0 48 56.2
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 1.6e-07 59.3 62 45.2
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 3.6e-07 58.2 34 73.5
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 4.7e-07 57.8 77 42.9
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 1.4e-06 56.2 34 70.6
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 1.8e-06 55.8 43 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 2.4e-06 55.5 48 50.0
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 4.0e-06 54.7 59 45.8


User provided reference genes

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