Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.0e-308 1061.6 545 100.0
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 8.5e-190 667.5 522 67.6
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.1e-184 649.0 536 64.0
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 7.7e-183 644.4 536 63.8
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.8e-177 625.9 521 63.5
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 9.1e-176 620.9 506 65.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 9.1e-176 620.9 536 63.8
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.1e-173 614.0 512 64.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 4.5e-167 592.0 541 59.0
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-164 583.6 544 59.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 8.0e-156 554.7 550 55.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 5.8e-146 521.9 462 60.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 9.8e-146 521.2 551 53.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 6.4e-145 518.5 552 53.1
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 7.0e-144 515.0 525 54.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.0e-143 511.9 549 53.4
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 7.8e-143 511.5 481 57.6
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 5.2e-139 498.8 476 57.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.0e-138 496.9 550 53.3
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.0e-138 496.9 526 54.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 3.4e-138 496.1 523 54.3
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.4e-138 495.7 521 55.3
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 4.4e-138 495.7 551 52.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 5.8e-138 495.4 484 56.4
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 5.8e-138 495.4 484 56.4
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.0e-135 485.3 511 54.4
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.0e-134 483.0 530 51.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 8.9e-131 471.5 511 52.3
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 9.9e-130 468.0 434 57.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 9.9e-130 468.0 518 50.6
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.1e-128 464.5 522 50.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.6e-127 460.7 519 51.1
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.6e-127 460.7 495 53.3
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.6e-127 460.7 527 51.4
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.0e-126 458.0 474 53.0
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.6e-126 455.3 413 57.9
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.5e-125 454.1 510 50.0
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.3e-125 453.0 387 60.7
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.3e-125 452.6 556 51.3
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 9.6e-125 451.4 545 48.3
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 9.6e-125 451.4 502 51.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.2e-122 444.5 490 50.4
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.5e-122 444.1 566 46.8
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 3.4e-122 443.0 465 53.1
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.4e-122 443.0 508 50.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 4.4e-122 442.6 582 46.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.7e-121 440.7 511 48.9
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 7.1e-120 435.3 533 50.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 7.1e-120 435.3 596 44.8
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 9.3e-120 434.9 560 49.6
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 9.3e-120 434.9 497 51.1
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.2e-119 434.5 505 48.5
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.3e-118 431.0 533 47.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.5e-117 427.6 534 48.9
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.5e-117 426.8 514 47.9
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 9.6e-117 424.9 507 47.3
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.1e-116 423.7 535 47.3
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.1e-116 423.7 559 46.3
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 6.2e-116 422.2 508 47.2
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.9e-115 418.7 583 44.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.2e-114 417.9 519 48.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.5e-114 416.0 529 47.1
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 7.6e-114 415.2 485 50.3
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.7e-113 414.1 426 54.0
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 4.9e-113 412.5 537 46.7
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 8.4e-113 411.8 513 47.0
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 8.4e-113 411.8 515 47.0
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 8.4e-113 411.8 410 55.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 8.4e-113 411.8 604 42.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 7.1e-112 408.7 412 53.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.7e-111 406.8 479 48.9
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.8e-110 404.1 500 46.6
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.7e-110 401.7 417 51.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-108 397.9 567 43.4
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.6e-108 397.5 577 43.5
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.8e-108 396.7 597 42.0
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.4e-107 394.4 481 46.8
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.1e-107 393.3 514 47.1
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.5e-106 391.0 570 43.9
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.5e-106 389.4 403 51.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.7e-105 387.5 549 43.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.9e-105 386.7 523 44.4
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.4e-104 384.4 493 45.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 9.3e-104 381.7 524 44.1
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-101 373.6 544 42.3
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.1e-99 368.2 462 47.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.1e-99 366.7 507 45.0
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.2e-98 364.8 500 44.8
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.2e-98 364.8 466 43.3
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.5e-98 362.8 532 40.4
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.0e-97 361.7 498 43.0
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 4.2e-96 356.3 500 42.2
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 4.2e-96 356.3 500 42.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.2e-96 356.3 500 42.2
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.1e-95 354.0 526 40.9
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.5e-95 353.2 499 42.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.6e-95 352.8 479 44.3
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.1e-93 348.2 388 52.3
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.7e-92 343.2 454 41.9
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.8e-92 342.8 471 46.5
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.4e-91 341.3 504 40.9
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.8e-91 340.9 490 41.2
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 6.5e-89 332.4 484 40.7
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.5e-88 330.5 567 38.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.1e-85 321.6 558 36.9
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 9.7e-85 318.5 486 39.5
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.4e-83 314.7 389 49.4
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 5.0e-81 306.2 580 37.1
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.3e-77 293.5 297 55.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 4.5e-74 283.1 388 48.5
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.7e-71 273.1 232 57.3
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.1e-71 272.7 358 48.3
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.7e-68 263.5 385 47.3
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.5e-64 250.8 535 33.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-60 238.4 357 42.6
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.8e-60 237.3 288 50.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.6e-53 214.2 361 40.2
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 7.7e-50 202.6 151 65.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.8e-49 200.3 165 56.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.5e-48 197.6 166 56.6
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.6e-47 193.7 240 41.2
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.8e-46 191.4 341 38.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 8.0e-39 166.0 281 36.3
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 6.8e-38 162.9 248 38.3
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.4e-37 160.6 288 35.1
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 7.0e-35 152.9 231 38.1
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.9e-32 144.8 298 31.5
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-30 138.7 273 34.4
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.9e-28 130.2 231 35.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.2e-26 125.6 172 43.6
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 7.8e-26 122.9 134 47.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.6e-24 116.7 86 58.1
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.6e-24 116.7 86 58.1
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.3e-20 105.5 333 25.2
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.9e-19 101.7 145 45.5
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.7e-18 97.8 102 52.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-16 92.4 332 24.4
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.5e-16 91.3 266 26.3
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-12 78.6 249 24.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-12 78.6 249 24.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.7e-12 78.6 249 24.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.8e-12 77.4 249 23.3
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.8e-12 77.4 249 23.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.2e-11 73.9 65 47.7


User provided reference genes

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