Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.7e-45 185.7 96 100.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.6e-35 152.5 96 81.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 8.0e-35 150.2 87 87.4
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.0e-34 149.8 96 80.2
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.2e-33 146.4 96 76.0
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.2e-33 146.4 96 77.1
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 2.0e-33 145.6 92 77.2
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 2.0e-33 145.6 95 75.8
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.6e-33 145.2 93 75.3
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.6e-33 145.2 90 82.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 3.4e-33 144.8 91 78.0
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 4.4e-33 144.4 91 78.0
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 7.5e-33 143.7 90 76.7
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 9.8e-33 143.3 90 81.1
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 9.8e-33 143.3 90 81.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-32 142.9 90 81.1
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.3e-32 142.9 90 81.1
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.3e-32 142.9 93 76.3
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.3e-32 142.9 93 75.3
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.7e-32 142.5 91 78.0
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.2e-32 142.1 89 79.8
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 2.9e-32 141.7 96 74.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.9e-32 141.7 88 78.4
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.7e-32 141.4 96 72.9
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 3.7e-32 141.4 93 75.3
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 3.7e-32 141.4 93 75.3
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 3.7e-32 141.4 88 78.4
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 6.4e-32 140.6 88 79.5
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 6.4e-32 140.6 89 75.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 8.3e-32 140.2 87 80.5
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 8.3e-32 140.2 87 80.5
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.1e-31 139.8 89 77.5
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.4e-31 138.7 96 71.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.2e-31 138.3 88 77.3
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.2e-31 138.3 88 77.3
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.2e-31 138.3 91 76.9
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 3.2e-31 138.3 96 71.9
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 7.0e-31 137.1 88 75.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.2e-30 136.3 90 77.8
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 1.2e-30 136.3 94 70.2
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.7e-30 135.2 90 71.1
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 3.5e-30 134.8 90 75.6
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 4.6e-30 134.4 82 81.7
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 1.0e-29 133.3 88 73.9
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.0e-29 133.3 83 80.7
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 1.3e-29 132.9 82 81.7
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.3e-29 132.9 82 80.5
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.3e-29 132.9 82 80.5
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 1.3e-29 132.9 82 80.5
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.7e-29 132.5 86 75.6
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 2.3e-29 132.1 89 73.0
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 3.9e-29 131.3 80 83.8
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.9e-29 131.3 88 75.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 5.0e-29 131.0 84 76.2
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 5.0e-29 131.0 94 67.0
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 8.6e-29 130.2 87 72.4
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 8.6e-29 130.2 88 71.6
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 8.6e-29 130.2 88 71.6
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 8.6e-29 130.2 95 69.5
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.5e-28 129.4 93 66.7
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.5e-28 129.4 87 72.4
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.5e-28 129.4 80 82.5
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.5e-28 129.4 86 73.3
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.9e-28 129.0 95 63.2
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.5e-28 128.6 86 74.4
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 3.3e-28 128.3 85 78.8
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.3e-28 128.3 96 72.9
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 4.3e-28 127.9 82 74.4
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 4.3e-28 127.9 86 69.8
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.6e-28 127.5 83 79.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.6e-28 127.5 83 79.5
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 7.3e-28 127.1 95 62.1
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 7.3e-28 127.1 86 70.9
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 7.3e-28 127.1 79 82.3
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 9.5e-28 126.7 95 63.2
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 9.5e-28 126.7 90 65.6
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 9.5e-28 126.7 76 82.9
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.1e-27 125.6 86 73.3
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 3.6e-27 124.8 80 80.0
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 3.6e-27 124.8 92 68.5
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 3.6e-27 124.8 88 69.3
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 4.7e-27 124.4 80 77.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 4.7e-27 124.4 85 69.4
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 6.2e-27 124.0 91 68.1
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 8.0e-27 123.6 91 69.2
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.1e-26 123.2 93 64.5
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.1e-26 123.2 107 65.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.4e-26 122.9 80 78.8
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.8e-26 122.5 80 80.0
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.8e-26 122.5 86 72.1
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.3e-26 122.1 85 74.1
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 4.0e-26 121.3 88 70.5
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.2e-26 120.9 82 73.2
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 5.2e-26 120.9 75 81.3
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.2e-26 120.9 73 83.6
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 6.8e-26 120.6 81 72.8
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 6.8e-26 120.6 81 72.8
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 6.8e-26 120.6 88 65.9
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 72.8
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 72.8
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 8.9e-26 120.2 81 72.8
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.9e-26 120.2 88 72.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 2.0e-25 119.0 82 72.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.0e-25 119.0 87 66.7
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.0e-25 119.0 87 67.8
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 2.6e-25 118.6 80 77.5
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.6e-25 118.6 79 77.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.4e-25 118.2 88 71.6
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 5.8e-25 117.5 74 81.1
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 5.8e-25 117.5 88 65.9
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 7.5e-25 117.1 88 64.8
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.2e-24 115.5 91 62.6
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-24 115.5 91 62.6
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-24 115.5 91 62.6
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-24 115.5 91 62.6
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.2e-24 115.5 88 65.9
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 2.2e-24 115.5 80 76.2
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 2.2e-24 115.5 86 68.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.9e-24 115.2 88 64.8
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.9e-24 115.2 80 75.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.1e-23 113.2 81 67.9
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-23 113.2 81 67.9
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-23 113.2 81 67.9
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.6e-22 109.4 81 60.5
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 7.8e-22 107.1 83 65.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 7.8e-22 107.1 83 65.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 7.8e-22 107.1 83 65.1
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.3e-21 106.3 75 72.0
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.9e-21 104.8 73 74.0
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 8.6e-21 103.6 79 60.8
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.9e-20 102.4 79 70.9
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 2.8e-19 98.6 78 62.8
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 4.7e-19 97.8 78 62.8
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.3e-18 95.5 72 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 2.0e-17 92.4 77 59.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.4e-17 91.3 56 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.1e-15 86.7 74 59.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 3.5e-14 81.6 57 64.9
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.0e-13 80.1 53 67.9
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.3e-13 79.7 83 45.8
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 3.0e-13 78.6 81 54.3
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.0e-13 78.6 52 73.1
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.0e-13 78.6 52 73.1
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.1e-10 70.1 51 66.7
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.1e-10 68.6 40 80.0


User provided reference genes

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