Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.4e-71 272.7 128 100.0
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.5e-28 129.8 151 47.7
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.4e-26 122.5 181 40.9
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 5.3e-26 121.3 181 40.9
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.0e-25 119.4 181 40.9
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 2.6e-25 119.0 180 41.1
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 2.6e-25 119.0 181 38.7
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 3.5e-25 118.6 180 40.6
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.9e-25 117.9 180 40.6
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 5.9e-25 117.9 187 39.0
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 7.7e-25 117.5 180 40.0
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 7.7e-25 117.5 181 38.7
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 7.7e-25 117.5 181 38.7
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 1.0e-24 117.1 181 39.2
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 1.7e-24 116.3 181 40.3
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.7e-24 116.3 181 39.2
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 2.2e-24 115.9 180 40.6
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 2.9e-24 115.5 180 38.3
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 2.9e-24 115.5 180 38.9
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 3.8e-24 115.2 180 40.0
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 5.0e-24 114.8 181 39.8
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 6.5e-24 114.4 181 38.1
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 6.5e-24 114.4 181 38.1
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 6.5e-24 114.4 180 41.7
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 8.5e-24 114.0 111 51.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 1.1e-23 113.6 180 41.1
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 1.1e-23 113.6 181 38.1
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 1.9e-23 112.8 181 39.2
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 3.2e-23 112.1 112 50.9
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 3.2e-23 112.1 181 39.8
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 3.2e-23 112.1 180 36.1
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.2e-23 112.1 181 39.8
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.2e-23 112.1 180 37.8
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 4.2e-23 111.7 122 49.2
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 5.5e-23 111.3 181 37.6
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 5.5e-23 111.3 181 37.6
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 5.5e-23 111.3 181 37.0
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 7.2e-23 110.9 181 38.1
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.2e-22 110.2 181 37.6
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.2e-22 110.2 181 37.0
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.2e-22 110.2 180 38.9
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 3.6e-22 108.6 181 38.7
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 6.1e-22 107.8 180 36.7
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 6.1e-22 107.8 178 38.8
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 6.1e-22 107.8 183 38.3
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.0e-21 107.1 122 47.5
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.0e-21 107.1 181 38.1
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 2.3e-21 105.9 179 35.8
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 3.0e-21 105.5 180 37.8
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 3.0e-21 105.5 128 42.2
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 3.0e-21 105.5 181 37.6
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 4.0e-21 105.1 179 36.3
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 4.0e-21 105.1 180 36.1
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 4.0e-21 105.1 180 36.1
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 5.2e-21 104.8 112 46.4
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 8.8e-21 104.0 181 36.5
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 8.8e-21 104.0 181 36.5
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 8.8e-21 104.0 181 35.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 8.8e-21 104.0 180 36.7
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 1.1e-20 103.6 188 35.1
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.1e-20 103.6 181 36.5
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.0e-20 102.8 129 41.9
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 2.6e-20 102.4 111 45.9
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 3.3e-20 102.1 128 41.4
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.3e-20 102.1 180 35.6
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 3.3e-20 102.1 112 48.2
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 3.3e-20 102.1 180 35.6
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 3.3e-20 102.1 180 35.6
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.3e-20 102.1 112 46.4
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.4e-20 101.7 181 35.4
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 4.4e-20 101.7 181 34.8
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 7.4e-20 100.9 112 44.6
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 7.4e-20 100.9 129 41.1
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 9.7e-20 100.5 180 34.4
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 9.7e-20 100.5 181 35.9
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 9.7e-20 100.5 112 45.5
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 9.7e-20 100.5 182 35.7
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.3e-19 100.1 111 45.0
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.3e-19 100.1 181 35.9
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 1.7e-19 99.8 181 33.1
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.7e-19 99.8 181 33.7
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.2e-19 99.4 68 64.7
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 2.2e-19 99.4 181 34.8
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.2e-19 99.4 180 33.9
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 2.2e-19 99.4 180 33.9
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.2e-19 99.4 128 41.4
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 2.8e-19 99.0 112 45.5
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 2.8e-19 99.0 112 45.5
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.8e-19 98.2 181 34.8
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 4.8e-19 98.2 181 34.8
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 6.3e-19 97.8 112 45.5
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 8.2e-19 97.4 181 33.1
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 8.2e-19 97.4 112 44.6
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 8.2e-19 97.4 130 40.0
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 8.2e-19 97.4 179 34.6
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 2.4e-18 95.9 181 33.1
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.4e-18 95.9 181 33.1
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 2.4e-18 95.9 181 33.1
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 4.1e-18 95.1 122 42.6
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 5.3e-18 94.7 181 32.0
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.0e-18 94.4 111 43.2
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.0e-18 94.4 111 43.2
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.6e-17 93.2 179 33.5
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.6e-17 93.2 112 43.8
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.0e-17 92.8 127 40.2
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 4.5e-17 91.7 180 35.0
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 7.7e-17 90.9 179 33.5
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 7.7e-17 90.9 198 32.8
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.0e-16 90.5 180 33.9
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 1.3e-16 90.1 190 34.2
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.7e-16 89.7 106 45.3
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 2.2e-16 89.4 72 56.9
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 2.9e-16 89.0 111 41.4
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.8e-16 88.6 53 71.7
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 5.0e-16 88.2 190 33.7
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.9e-15 86.3 190 33.2
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 1.9e-15 86.3 127 35.4
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.5e-15 85.9 107 43.9
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.5e-15 85.9 111 39.6
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 9.4e-15 84.0 190 33.2
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.2e-14 83.6 122 38.5
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 3.6e-14 82.0 98 45.9
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.3e-13 79.3 121 40.5
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 5.2e-13 78.2 111 36.9
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 6.8e-13 77.8 113 40.7
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.5e-12 76.6 190 32.1
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.8e-10 69.7 53 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 5.4e-10 68.2 53 54.7
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 9.1e-10 67.4 42 64.3
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 9.1e-10 67.4 53 52.8
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.6e-09 66.6 38 65.8
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.6e-09 66.6 55 56.4
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 7.2e-07 57.8 77 44.2
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.2e-06 57.0 61 42.6


User provided reference genes

Program Settings