Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.7e-296 1021.9 519 100.0
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 4.5e-249 864.4 463 92.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.5e-247 859.4 506 86.2
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 9.4e-247 856.7 512 85.4
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.4e-247 856.7 512 85.5
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.7e-246 854.4 514 83.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.0e-244 849.0 513 84.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.2e-243 845.5 514 83.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.8e-243 845.1 514 83.9
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 2.4e-242 842.0 519 80.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.0e-241 839.0 519 82.5
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.9e-239 832.4 464 86.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.2e-239 830.5 547 79.0
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 7.2e-239 830.5 516 81.8
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.7e-238 827.8 520 80.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.4e-237 826.2 521 79.7
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.8e-237 825.9 517 80.1
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.3e-237 825.5 510 81.6
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.0e-237 825.1 458 86.5
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.0e-237 825.1 501 82.4
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 4.0e-237 824.7 463 87.0
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 8.8e-237 823.5 507 80.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.2e-236 823.2 514 80.4
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.6e-236 822.0 491 83.1
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 3.4e-236 821.6 519 80.2
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 5.7e-236 820.8 515 79.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.5e-236 820.5 515 79.6
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.3e-235 819.7 527 79.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.7e-235 818.1 515 79.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 3.7e-235 818.1 462 84.8
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 4.8e-235 817.8 524 79.4
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.3e-235 817.0 519 78.8
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.1e-234 816.6 513 79.9
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.8e-234 815.8 508 79.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 5.4e-234 814.3 517 79.9
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.4e-234 814.3 517 79.3
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 2.0e-233 812.4 508 80.5
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.5e-233 811.6 466 84.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.3e-232 809.7 524 78.2
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.9e-232 808.5 464 85.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.9e-232 808.5 528 76.9
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.1e-231 806.6 523 78.4
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.5e-231 806.2 537 77.1
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 2.5e-231 805.4 475 82.3
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.2e-231 804.7 458 84.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.2e-231 804.7 553 75.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 5.5e-231 804.3 530 77.7
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.2e-231 803.9 526 77.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.2e-231 803.9 462 84.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-230 802.7 553 74.9
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.6e-230 802.7 515 78.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.7e-230 802.0 515 78.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 6.1e-230 800.8 526 76.8
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 6.1e-230 800.8 467 83.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 6.1e-230 800.8 478 81.6
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.8e-229 799.3 530 76.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.0e-229 798.5 463 84.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 5.2e-229 797.7 522 78.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 8.8e-229 797.0 485 80.6
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.2e-228 796.6 515 78.4
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.0e-228 795.8 458 83.2
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.4e-228 795.0 524 75.2
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 9.8e-228 793.5 525 76.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.3e-227 793.1 493 79.9
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.7e-227 792.7 469 81.0
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.2e-227 792.3 458 84.1
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.2e-227 792.3 516 77.7
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.1e-226 788.1 460 82.6
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 7.0e-226 787.3 509 76.8
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 9.1e-226 786.9 472 80.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.2e-225 786.6 484 78.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.0e-225 785.8 479 79.5
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 4.5e-225 784.6 478 79.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 7.7e-225 783.9 458 81.2
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 7.7e-225 783.9 458 82.3
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.7e-224 782.7 462 82.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.0e-224 781.2 515 76.5
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 511 75.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 7.2e-223 777.3 457 82.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 3.6e-222 775.0 458 82.5
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.7e-222 774.6 462 80.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.8e-221 772.7 477 78.8
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 6.8e-221 770.8 553 72.5
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.2e-218 761.9 498 75.3
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-217 760.0 516 72.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.2e-217 760.0 501 73.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.5e-217 758.4 553 70.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 7.8e-217 757.3 516 72.5
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-216 756.9 516 73.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.0e-216 756.9 515 73.6
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.3e-216 756.5 490 75.1
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-216 755.4 516 72.3
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.6e-215 751.1 532 73.7
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.2e-214 750.0 500 75.0
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.6e-214 749.6 457 78.6
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.6e-214 749.6 515 72.6
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 6.2e-214 747.7 457 80.1
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.3e-213 745.7 544 70.0
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.1e-213 745.3 481 76.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 5.2e-213 744.6 510 72.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.3e-211 740.0 517 74.1
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 3.5e-209 731.9 507 72.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.3e-207 724.9 372 96.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.4e-205 719.9 466 73.0
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 6.8e-205 717.6 466 72.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 4.4e-204 714.9 464 73.9
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.7e-203 713.0 372 94.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.2e-202 707.2 415 82.9
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.6e-201 706.4 458 75.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.6e-201 706.4 460 75.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.6e-201 704.9 411 81.3
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.0e-200 702.2 477 71.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 8.6e-200 700.7 508 68.5
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 6.2e-198 694.5 510 71.8
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.4e-196 688.3 428 82.2
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.9e-195 684.9 462 74.5
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.5e-193 678.7 385 86.0
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 4.6e-193 678.3 385 86.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 1.6e-190 669.8 511 67.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 7.1e-186 654.4 716 52.0
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.1e-183 647.1 392 82.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 8.1e-182 641.0 503 65.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 4.0e-181 638.6 453 66.0
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 9.0e-181 637.5 516 65.5
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.8e-171 605.5 462 67.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-170 603.2 483 64.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 6.0e-169 598.2 503 62.6
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.9e-167 593.2 359 82.7
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-157 560.5 396 73.2
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.2e-118 430.3 252 83.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-117 426.8 374 63.1
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.2e-114 416.4 238 84.5
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.6e-103 380.2 292 64.7
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 7.5e-95 352.1 250 72.0
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 9.8e-95 351.7 457 40.9
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.6e-89 333.2 467 39.2
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.9e-88 328.6 201 79.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-87 327.4 468 38.2
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 7.6e-79 298.9 230 64.8
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 9.6e-66 255.4 135 91.9
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.8e-65 253.1 399 40.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.2e-63 248.4 172 74.4
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 6.7e-59 232.6 176 67.6
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-54 216.5 165 67.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-51 208.4 196 56.1
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.1e-44 184.5 124 75.8
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.0e-44 183.0 98 88.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 6.7e-43 179.5 130 62.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.7e-43 179.5 386 30.3
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.7e-43 179.5 119 68.9
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-42 178.3 249 42.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 6.9e-40 169.5 91 87.9
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-32 145.6 80 85.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 9.1e-32 142.5 93 76.3
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.0e-31 141.4 80 81.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.9e-29 134.8 290 31.7
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 3.2e-29 134.0 100 68.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.7e-28 131.0 100 68.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 4.6e-28 130.2 74 81.1
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.5e-13 82.0 75 54.7
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.5e-13 81.3 54 64.8
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 9.4e-13 79.3 47 74.5
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.0e-11 75.9 41 80.5
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.3e-09 68.9 120 45.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 6.3e-09 66.6 35 82.9
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 5.3e-08 63.5 59 57.6
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 9.1e-08 62.8 38 78.9
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 3.5e-07 60.8 290 26.6


User provided reference genes

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