Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.4e-220 769.2 368 100.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.5e-153 545.8 383 66.6
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-148 530.0 385 65.5
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-148 530.0 385 65.5
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-148 529.6 374 66.8
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-148 529.6 374 66.8
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 1.1e-145 520.4 383 62.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 2.6e-142 509.2 393 60.8
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 5.8e-142 508.1 403 61.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 7.6e-142 507.7 388 61.6
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.2e-141 506.1 403 61.0
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 6.4e-141 504.6 388 61.9
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.4e-140 502.7 383 63.2
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 3.0e-138 495.7 383 60.3
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.9e-137 493.0 383 60.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 6.9e-135 484.6 383 58.2
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 5.8e-134 481.5 387 57.4
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 1.1e-132 477.2 389 57.3
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.1e-132 477.2 388 58.0
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.4e-132 476.9 388 57.7
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.2e-132 475.3 389 56.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 7.1e-132 474.6 388 57.7
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.2e-131 473.8 388 57.7
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 6.0e-131 471.5 392 56.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 6.0e-131 471.5 385 56.6
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 7.9e-131 471.1 392 56.4
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.8e-130 469.9 392 56.1
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.8e-130 469.9 392 56.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.8e-130 469.9 392 56.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 2.3e-130 469.5 391 56.3
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.0e-130 469.2 391 57.0
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.0e-130 469.2 390 56.4
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.1e-130 468.4 389 55.8
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.9e-129 466.5 392 56.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.9e-129 466.5 389 56.3
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.5e-129 466.1 391 56.8
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 5.6e-129 464.9 388 56.4
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 7.4e-129 464.5 385 56.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 7.4e-129 464.5 388 55.7
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.3e-128 463.8 391 56.0
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 1.3e-128 463.8 395 55.7
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.6e-128 463.4 392 54.3
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.6e-128 463.4 386 55.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.8e-128 462.6 391 56.0
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.8e-128 461.8 384 57.0
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.4e-127 460.3 391 55.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 1.8e-127 459.9 393 55.0
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 3.1e-127 459.1 385 55.3
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 4.0e-127 458.8 390 54.9
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.3e-127 458.4 388 55.2
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.2e-126 457.2 393 54.7
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.5e-126 456.8 389 56.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.0e-126 456.4 388 55.4
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.0e-126 456.4 388 55.2
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.0e-126 456.4 388 55.2
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 3.4e-126 455.7 389 55.3
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.5e-126 455.3 389 55.8
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.6e-126 454.5 388 54.6
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.0e-125 454.1 398 55.5
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.0e-125 454.1 388 53.9
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.7e-125 453.4 388 54.6
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 8.4e-125 451.1 387 53.5
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.5e-124 449.5 388 54.1
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.2e-124 449.1 389 54.5
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 1.2e-123 447.2 394 53.6
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.6e-123 446.8 385 54.5
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 6.0e-123 444.9 388 55.4
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-122 443.7 373 55.2
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 6.7e-122 441.4 390 53.3
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.5e-121 440.3 389 53.7
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 2.5e-121 439.5 388 53.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 3.3e-121 439.1 387 53.0
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 7.4e-121 438.0 384 53.9
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.6e-120 436.8 392 52.6
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 3.7e-120 435.6 391 51.4
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 4.8e-120 435.3 396 53.5
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.8e-120 435.3 388 52.3
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.4e-119 433.7 391 53.7
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.2e-118 430.6 391 53.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.2e-118 430.6 389 51.9
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.5e-118 430.3 385 52.5
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.4e-118 429.1 397 50.9
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.4e-118 429.1 392 52.0
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.3e-117 427.2 392 51.8
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.2e-117 426.4 390 52.1
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 3.8e-117 425.6 393 51.7
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 5.0e-117 425.2 384 53.6
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 6.5e-117 424.9 388 51.3
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 6.5e-117 424.9 388 51.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 8.5e-117 424.5 389 51.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 8.5e-117 424.5 387 51.7
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 8.5e-117 424.5 389 51.7
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.2e-116 422.5 389 51.7
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 4.2e-116 422.2 397 52.1
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.2e-116 422.2 385 51.2
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 3.6e-115 419.1 391 50.6
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 4.6e-115 418.7 392 52.3
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 4.6e-115 418.7 391 50.9
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 7.9e-115 417.9 391 50.4
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 2.3e-114 416.4 383 51.4
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.5e-113 413.7 397 51.6
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.9e-113 413.3 386 51.0
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.5e-113 412.9 384 50.8
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 3.3e-113 412.5 387 50.4
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.4e-111 407.1 376 50.5
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.4e-111 407.1 377 51.5
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.5e-110 403.7 373 50.1
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.0e-110 403.3 399 50.1
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.4e-110 402.5 395 49.9
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.9e-109 399.4 384 49.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.9e-109 399.4 384 49.2
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 5.0e-109 398.7 398 51.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 6.5e-109 398.3 386 48.4
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 7.2e-108 394.8 385 49.9
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 9.4e-108 394.4 391 50.1
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 7.4e-105 384.8 385 47.5
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 9.7e-105 384.4 392 46.9
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.4e-103 379.8 390 47.4
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 2.0e-97 360.1 258 64.7
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.3e-96 355.1 396 46.5
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 7.0e-95 351.7 397 43.8
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.0e-94 350.1 392 45.7
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 3.6e-91 339.3 388 43.6
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 8.0e-91 338.2 399 43.4
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.6e-89 333.2 403 42.7
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 3.3e-89 332.8 403 42.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.7e-88 329.3 370 46.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.1e-87 327.8 394 44.2
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.9e-85 319.7 393 42.5
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.0e-82 311.2 394 39.6
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 2.2e-80 303.5 400 43.2
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 4.8e-80 302.4 307 47.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 3.5e-78 296.2 390 39.7
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 4.7e-75 285.8 368 40.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.0e-74 284.6 393 38.4
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.3e-68 261.9 280 47.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.5e-60 236.9 364 40.7
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.3e-56 224.6 253 48.6
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.6e-54 217.6 227 52.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 3.3e-52 209.9 238 49.2
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.1e-51 207.2 162 59.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.2e-46 191.4 389 32.6
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 6.0e-46 189.1 418 29.2
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 7.6e-41 172.2 184 43.5
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.3e-40 171.4 216 40.7
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.7e-32 144.4 386 27.5
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.3e-29 134.8 78 79.5
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 4.8e-27 126.3 88 64.8
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.4e-23 114.0 123 48.0
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 2.1e-14 84.3 242 26.9
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.8e-11 73.9 205 23.9
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 5.3e-10 69.7 127 36.2
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 1.3e-08 65.1 45 71.1
Psat2g156560 Pisum sativum HOM05D000020 ORTHO05D321553 4.6e-06 56.6 51 49.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 6.1e-06 56.2 36 69.4


User provided reference genes

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