Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 0.0e+00 1603.2 817 100.0
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 0.0e+00 1243.0 810 78.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1231.9 812 78.9
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 0.0e+00 1229.2 812 78.2
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1222.6 810 77.9
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 0.0e+00 1218.4 813 77.5
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 0.0e+00 1198.3 815 76.2
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1197.6 813 76.0
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 0.0e+00 1193.7 812 76.7
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1192.6 813 75.9
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 0.0e+00 1187.6 812 76.2
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 0.0e+00 1155.6 786 76.1
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 0.0e+00 1080.9 824 68.2
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 2.8e-311 1071.6 823 69.5
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 7.2e-310 1067.0 784 69.4
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 2.0e-307 1058.9 824 67.1
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.7e-303 1045.8 825 66.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.2e-302 1041.6 825 66.1
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.2e-302 1041.6 824 67.1
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 4.7e-301 1037.7 830 67.0
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 4.7e-301 1037.7 830 66.7
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 8.3e-298 1026.9 826 65.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 3.1e-297 1025.0 829 65.9
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 9.1e-297 1023.5 825 66.7
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.6e-296 1022.7 825 65.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 2.7e-296 1021.9 820 64.6
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 7.7e-296 1020.4 827 66.4
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.6e-295 1016.9 820 65.0
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.1e-294 1016.5 799 65.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 3.3e-294 1015.0 826 64.6
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 821 64.8
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.5e-291 1006.1 820 64.5
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.0e-291 1005.7 820 64.8
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 8.3e-290 1000.3 820 64.0
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-289 999.2 815 63.8
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 1.2e-288 996.5 841 62.7
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 2.9e-287 991.9 820 63.8
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.5e-286 989.6 824 64.6
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 4.7e-285 984.6 824 64.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.0e-284 983.4 824 63.8
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-284 983.0 869 60.6
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.0e-283 979.2 810 63.5
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 2.2e-282 975.7 828 62.2
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.5e-280 968.4 826 63.1
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 7.8e-280 967.2 826 61.7
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.9e-279 964.9 818 61.9
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.6e-277 959.5 826 63.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 3.6e-277 958.4 827 60.8
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.8e-276 956.1 800 62.2
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 2.0e-275 952.6 829 60.7
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 2.9e-274 948.7 827 60.2
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 1.1e-273 946.8 808 61.5
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 2.4e-273 945.7 803 62.4
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.3e-271 939.9 825 61.2
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.3e-271 939.1 832 60.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 1.5e-270 936.4 826 62.1
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 2.5e-270 935.6 813 60.9
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.8e-268 929.5 811 60.5
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 4.0e-268 928.3 819 59.7
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 8.9e-268 927.2 808 60.8
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.5e-267 926.4 819 59.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 5.8e-267 924.5 808 59.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 5.8e-267 924.5 826 59.7
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.7e-266 921.8 819 60.8
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 2.4e-265 919.1 832 60.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 9.2e-265 917.1 805 60.0
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.3e-263 912.5 808 60.4
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 3.0e-263 912.1 810 60.1
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.6e-263 911.0 808 60.1
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.1e-260 903.7 811 58.0
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.4e-260 903.3 737 66.1
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 9.2e-257 890.6 809 58.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 2.1e-253 879.4 818 59.0
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.8e-253 879.0 826 58.1
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.6e-251 872.5 808 58.4
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 9.9e-251 870.5 832 57.3
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.3e-250 870.2 833 57.6
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 4.9e-250 868.2 819 57.8
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.1e-249 867.1 831 57.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 5.4e-249 864.8 804 58.3
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.2e-248 863.6 829 57.2
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.6e-248 861.7 828 56.9
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 6.0e-248 861.3 833 56.7
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.5e-246 856.7 827 57.4
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.5e-246 855.9 830 56.9
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 2.8e-245 852.4 831 56.4
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.4e-244 850.1 834 57.0
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.4e-244 850.1 834 57.0
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.4e-244 850.1 834 57.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 3.1e-244 849.0 827 57.1
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 5.3e-244 848.2 788 58.0
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 5.6e-238 828.2 825 55.0
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.6e-232 810.1 799 55.7
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.1e-232 809.7 825 54.1
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 3.3e-222 775.8 623 66.8
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 7.4e-222 774.6 499 81.2
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.1e-206 724.2 794 51.8
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-195 687.2 656 57.2
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-195 687.2 656 57.2
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.7e-192 676.4 645 57.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 9.1e-188 661.4 490 69.8
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 2.2e-186 656.8 499 68.1
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 8.5e-186 654.8 499 68.9
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.4e-183 647.5 500 66.8
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 4.9e-181 639.0 538 63.0
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 7.0e-180 635.2 484 68.2
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 3.2e-172 609.8 492 65.2
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 3.2e-172 609.8 492 65.2
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 7.5e-166 588.6 850 42.9
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.7e-162 577.4 492 61.8
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 3.3e-161 573.2 571 53.2
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 3.7e-157 559.7 482 61.4
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.4e-150 536.6 460 60.9
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 4.4e-150 536.2 474 60.1
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 6.4e-149 532.3 746 43.2
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.1e-145 521.5 463 60.5
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.5e-145 521.2 460 61.7
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.9e-145 520.8 532 53.6
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.6e-145 519.2 475 59.8
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.2e-144 515.8 456 60.5
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 8.1e-144 515.4 464 59.7
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 3.1e-143 513.5 460 59.6
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 2.4e-140 503.8 414 63.0
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.3e-138 498.0 457 59.5
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.3e-137 493.0 471 58.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 9.9e-134 481.9 669 44.1
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.9e-133 480.3 462 55.8
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 8.4e-133 478.8 467 55.5
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.2e-132 476.9 692 41.6
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.3e-130 471.5 756 39.8
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.8e-127 461.1 468 53.4
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.5e-126 458.0 470 53.6
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.0e-126 457.6 740 40.1
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 2.0e-126 457.6 470 53.6
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 5.6e-121 439.5 457 53.0
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.4e-118 430.3 296 73.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 7.9e-115 419.1 464 50.6
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 2.5e-100 370.9 314 60.5
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.8e-98 364.8 647 40.0
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.7e-93 348.2 465 42.6
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.7e-89 332.4 231 77.5
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 8.2e-88 329.3 256 67.6
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-77 295.4 197 75.6
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.5e-65 255.4 362 41.2
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.0e-58 232.6 750 28.5
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 2.4e-55 221.5 147 69.4
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.5e-52 212.2 360 41.9
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.3e-52 211.1 166 67.5
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.3e-52 211.1 166 67.5
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 6.2e-51 206.8 445 32.8
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 9.8e-49 199.5 135 66.7
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-48 199.1 138 68.8
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.3e-29 135.2 93 66.7
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.3e-20 104.4 154 42.9
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.6e-20 104.0 154 42.2
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.0e-18 96.7 84 67.9
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.5e-17 94.4 96 51.0
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.4e-15 88.6 70 54.3
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.1e-11 75.5 54 64.8


User provided reference genes

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