Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 5.6e-92 340.9 169 100.0
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 5.5e-63 244.6 169 72.8
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 1.1e-60 236.9 164 73.2
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.4e-58 229.9 164 70.1
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 9.1e-58 227.3 152 75.7
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.2e-57 226.9 164 67.7
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.7e-56 223.0 169 68.6
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 6.5e-56 221.1 172 64.5
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 1.5e-55 219.9 169 68.0
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 1.5e-55 219.9 169 68.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 2.5e-55 219.2 165 65.5
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 3.2e-55 218.8 163 67.5
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 3.2e-55 218.8 163 68.7
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 4.2e-55 218.4 169 67.5
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 7.2e-55 217.6 163 65.6
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 4.7e-54 214.9 164 65.9
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 6.1e-54 214.5 163 66.9
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 8.0e-54 214.2 164 68.3
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 1.4e-53 213.4 169 64.5
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.0e-53 212.2 164 64.6
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.0e-53 212.2 163 67.5
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 4.0e-53 211.8 163 66.9
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 6.7e-53 211.1 169 63.9
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 8.8e-53 210.7 155 69.7
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 8.8e-53 210.7 155 69.7
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 1.5e-52 209.9 163 65.6
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 2.0e-52 209.5 163 67.5
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.6e-52 209.1 171 64.9
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 3.3e-52 208.8 163 64.4
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 4.4e-52 208.4 169 64.5
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 4.4e-52 208.4 153 69.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 4.4e-52 208.4 164 64.6
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 7.5e-52 207.6 165 63.6
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 7.5e-52 207.6 165 63.6
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 9.7e-52 207.2 165 63.6
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.7e-51 206.5 172 60.5
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 3.7e-51 205.3 164 63.4
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 6.3e-51 204.5 165 63.0
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.4e-50 203.4 172 59.3
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 3.1e-50 202.2 165 62.4
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 3.1e-50 202.2 164 62.2
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 4.1e-50 201.8 164 62.8
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 4.1e-50 201.8 166 63.3
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 4.5e-49 198.4 164 61.6
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.5e-49 198.4 163 61.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 4.5e-49 198.4 163 61.3
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.9e-49 198.0 164 61.6
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 7.7e-49 197.6 204 54.4
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 1.1e-47 193.7 166 60.2
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.5e-47 192.6 172 59.9
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 5.5e-47 191.4 185 57.3
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 9.4e-47 190.7 155 63.2
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 9.4e-47 190.7 164 59.8
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-46 189.5 169 61.5
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 3.6e-46 188.7 168 58.9
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.6e-46 188.7 163 58.3
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 6.1e-46 188.0 155 59.4
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.0e-45 187.2 163 61.3
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 1.4e-45 186.8 167 58.1
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.3e-45 186.0 163 58.3
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 3.0e-45 185.7 163 57.1
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 3.0e-45 185.7 155 61.9
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 6.8e-45 184.5 164 58.5
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.2e-44 183.7 172 55.2
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.2e-44 183.7 161 60.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.2e-44 183.7 164 57.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.3e-43 180.3 169 56.8
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 4.8e-43 178.3 172 57.0
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 8.3e-43 177.6 164 57.3
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 8.3e-43 177.6 164 57.3
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 1.1e-42 177.2 145 63.4
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.4e-42 176.8 163 58.3
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 1.4e-42 176.8 165 54.5
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 3.1e-42 175.6 163 57.7
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 3.1e-42 175.6 163 57.1
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 3.1e-42 175.6 171 56.7
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 3.1e-42 175.6 163 57.1
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 3.1e-42 175.6 163 57.1
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 3.1e-42 175.6 171 56.7
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 7.0e-42 174.5 173 54.9
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 9.1e-42 174.1 163 57.1
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.2e-41 173.7 141 61.7
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.2e-41 173.7 141 61.7
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.2e-41 173.7 141 61.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 2.0e-41 172.9 163 57.1
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 2.7e-41 172.6 163 55.8
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 3.5e-41 172.2 163 55.8
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 4.5e-41 171.8 163 56.4
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.5e-41 171.8 168 51.8
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 3.8e-40 168.7 155 55.5
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 4.2e-39 165.2 169 53.3
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.2e-38 163.7 171 52.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.6e-38 163.3 165 52.7
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.6e-38 163.3 124 66.1
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 2.1e-38 162.9 173 53.2
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.1e-38 162.9 155 56.1
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 2.3e-37 159.5 163 53.4
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 7.0e-34 147.9 116 61.2
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 1.1e-31 140.6 179 44.1
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.5e-31 140.2 179 44.7
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.4e-26 123.6 170 40.6
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.9e-26 123.2 108 60.2
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.7e-24 116.7 110 56.4
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 8.6e-24 114.4 102 54.9
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-22 110.5 167 39.5
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 8.0e-22 107.8 173 37.6
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 8.0e-22 107.8 108 54.6
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-21 107.5 150 43.3
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-21 107.1 183 35.5
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-21 106.3 150 43.3
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-21 105.5 175 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 3.4e-20 102.4 157 36.9
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-20 101.3 176 39.8
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 7.5e-20 101.3 158 40.5
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-19 100.1 137 40.1
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.7e-19 100.1 70 67.1
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-18 97.4 179 33.0
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-18 97.4 154 39.6
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-18 96.3 170 36.5
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 3.2e-18 95.9 188 35.1
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 6.0e-17 91.7 71 64.8
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.0e-16 90.9 163 35.6
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-14 84.0 155 32.3
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.3e-13 79.7 159 31.4
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.1e-13 79.3 146 33.6
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 8.9e-13 77.8 150 32.0
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.4e-12 75.9 166 28.9
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 4.4e-12 75.5 167 31.7
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-12 74.7 167 31.1
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-12 74.7 174 30.5
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 7.5e-12 74.7 61 62.3
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.7e-11 73.6 70 54.3
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-11 72.0 159 34.0
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-11 72.0 136 33.1
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-10 70.9 109 38.5
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-09 67.4 111 39.6
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-09 67.0 183 29.0
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 2.7e-09 66.2 45 75.6
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-08 64.3 124 29.0
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-08 64.3 104 33.7
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-08 64.3 173 27.7
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.5e-07 60.5 173 27.2
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 2.5e-07 59.7 128 30.5
Ciclev10022882m.g Citrus clementina HOM05D004737 ORTHO05D005623 2.8e-06 56.2 104 30.8


User provided reference genes

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