Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 2176.0 1122 100.0
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1926.0 1125 89.1
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1826.6 1130 84.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1816.6 1126 83.8
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1809.3 1134 83.0
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1793.9 1126 82.6
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1768.1 1125 81.1
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1766.5 1125 81.5
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1747.3 1126 80.9
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1726.1 1122 79.9
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1576.6 1121 74.7
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1572.8 1134 73.0
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1572.4 1130 74.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1548.5 1133 71.9
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1525.0 1135 71.5
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1506.9 1130 70.7
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1505.0 1131 70.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1503.4 1139 69.7
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1500.3 1129 70.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1132 69.8
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1486.1 1142 69.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1482.6 1133 69.3
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1481.8 1147 69.4
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1481.8 1131 69.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1481.1 1154 68.4
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1480.7 1126 69.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1479.5 1129 69.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1471.8 1127 69.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1469.9 1134 69.4
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1469.5 1132 69.8
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1469.1 1135 69.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1468.4 1136 69.8
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1462.2 1140 68.9
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1455.7 1123 69.1
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1448.7 1136 68.7
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1445.3 1123 68.6
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1443.7 1123 68.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1442.9 1138 68.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1433.7 1135 69.1
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1432.5 1132 68.2
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1427.9 1127 67.4
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1421.0 1144 67.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1421.0 1148 66.1
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1419.4 1134 67.3
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1404.0 1132 65.4
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1404.0 933 78.7
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1398.3 1120 67.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1396.3 933 78.5
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1381.7 1132 66.2
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1381.3 1089 66.5
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1379.0 1089 66.1
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1378.2 1137 65.8
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1375.5 1136 65.8
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1369.8 1136 64.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1366.3 1090 66.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1365.1 1128 64.5
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1363.6 1138 65.0
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1355.9 1137 65.1
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1354.3 1115 65.7
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1352.4 1136 64.2
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1348.6 1135 64.3
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1347.4 1140 64.6
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1347.0 1084 67.3
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1340.9 1124 64.8
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1338.6 1138 64.0
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1336.6 1091 65.3
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1333.2 1138 64.2
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1327.8 1144 63.6
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1319.3 1086 64.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1312.7 1146 62.8
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1305.8 1186 61.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1305.4 1144 61.3
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1301.6 1086 64.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1298.5 1086 63.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1298.5 1104 62.8
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1296.6 1115 63.4
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1293.5 1109 63.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1292.7 1089 63.7
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1280.4 1088 63.6
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1275.8 1082 63.2
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1273.8 1121 61.6
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1262.3 1086 63.4
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1246.1 1123 60.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1241.5 1090 60.6
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1237.6 1133 60.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1212.2 1010 65.2
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1184.5 1084 59.0
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1174.8 1306 52.8
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1153.3 1127 57.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1142.9 1016 62.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1132.5 1349 50.6
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1130.5 1102 56.5
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1127.5 960 65.0
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1116.7 941 63.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1115.9 1102 56.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1096.6 1102 56.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1093.6 1129 56.3
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1079.7 1072 56.2
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 3.5e-291 1005.4 924 58.8
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.5e-281 973.4 1022 55.4
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 9.7e-281 970.7 1049 54.7
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 1.4e-279 966.8 892 61.2
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 2.5e-244 849.7 795 61.4
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.9e-229 799.3 1140 42.4
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.1e-227 793.5 1125 41.5
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.8e-225 785.4 1123 42.3
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.2e-224 783.5 894 53.2
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 3.2e-223 779.6 1096 42.3
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 9.2e-223 778.1 1108 42.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 3.0e-221 773.1 714 58.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.6e-219 767.3 979 49.3
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.3e-213 747.7 889 51.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 1.6e-211 740.7 796 54.3
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 1.0e-197 694.9 646 61.0
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.9e-197 693.0 1055 38.8
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 4.8e-195 686.0 707 55.0
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 6.0e-190 669.1 521 65.5
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 5.1e-181 639.4 526 63.7
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.4e-170 604.7 422 75.1
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-169 601.3 430 73.7
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.3e-155 555.1 522 56.9
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 2.9e-136 490.7 486 56.2
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 2.3e-133 481.1 401 64.6
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.9e-115 420.2 330 66.1
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 3.2e-106 391.0 359 61.0
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 5.6e-103 380.2 666 40.2
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 3.6e-102 377.5 228 80.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 1.1e-101 375.9 825 32.2
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.5e-87 328.2 252 67.5
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.5e-87 328.2 351 51.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 5.4e-82 310.5 368 50.8
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 3.0e-80 304.7 1083 26.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 1.6e-78 298.9 230 68.7
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 5.6e-71 273.9 1279 22.6
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.2e-68 266.2 194 69.6
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 5.8e-68 263.8 193 70.5
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 2.2e-67 261.9 544 35.1
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 3.0e-64 251.5 141 87.9
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 6.2e-62 243.8 141 85.8
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.3e-61 240.7 142 83.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 2.5e-58 231.9 244 53.7
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 5.7e-55 220.7 256 51.2
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.1e-53 214.5 503 35.4
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.5e-51 206.8 167 67.1
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.5e-51 206.8 167 67.1
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 9.3e-50 203.4 115 85.2
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.6e-49 202.6 118 83.1
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.9e-47 195.7 115 81.7
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 7.4e-47 193.7 140 73.6
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 5.3e-45 187.6 142 74.6
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.1e-42 179.9 1149 21.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.0e-39 169.1 145 60.0
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.2e-38 165.6 122 76.2
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.8e-37 162.5 131 71.0
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 1.0e-35 156.8 82 90.2
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 3.8e-35 154.8 83 89.2
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.9e-33 147.1 193 51.3
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.0e-32 146.7 83 83.1
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.8e-32 146.0 112 68.8
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 3.3e-31 141.7 134 60.4
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 6.3e-30 137.5 167 49.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.4e-29 136.3 144 51.4
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.8e-29 136.0 88 84.1
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 5.3e-29 134.4 128 57.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.6e-25 122.9 115 56.5
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.4e-24 119.8 153 44.4
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 8.8e-24 117.1 134 47.8
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 2.2e-22 112.5 109 59.6
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.2e-20 106.7 102 54.9
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-19 102.8 95 54.7
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 6.5e-19 100.9 85 56.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.2e-17 96.7 87 52.9
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 3.8e-11 75.1 49 77.6
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 7.2e-10 70.9 59 67.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.3e-08 65.9 43 69.8
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 1.3e-06 60.1 45 57.8


User provided reference genes

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