Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.9e-172 608.6 334 100.0
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 3.2e-115 419.1 330 71.5
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 9.4e-115 417.5 332 69.3
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.6e-109 399.4 336 67.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.1e-107 394.0 313 70.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.9e-107 393.3 307 69.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.1e-104 384.0 283 70.7
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 8.2e-103 377.9 321 63.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.1e-102 377.5 309 66.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 9.1e-102 374.4 267 74.5
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 9.1e-102 374.4 306 65.7
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 3.5e-101 372.5 296 64.9
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 4.5e-101 372.1 296 67.6
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 4.5e-101 372.1 277 70.4
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 7.7e-101 371.3 305 67.5
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 7.7e-101 371.3 286 67.5
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.0e-100 370.9 319 61.4
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 6.5e-100 368.2 288 67.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.5e-99 367.1 320 65.9
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.5e-99 367.1 301 66.4
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.9e-99 366.7 309 64.1
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.9e-99 366.7 296 67.2
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.5e-99 366.3 305 66.2
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 4.2e-99 365.5 288 69.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 7.2e-99 364.8 294 68.0
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.2e-98 364.0 313 64.5
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.6e-98 363.6 290 65.5
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 2.1e-98 363.2 298 63.1
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.7e-98 362.8 313 64.5
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 6.1e-98 361.7 327 63.0
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.4e-97 360.5 326 62.0
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.4e-97 360.5 307 63.2
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.8e-97 360.1 270 69.3
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.8e-97 360.1 307 66.4
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.8e-97 360.1 290 65.5
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.5e-96 357.1 314 64.3
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.5e-96 357.1 294 64.3
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.5e-96 357.1 295 66.1
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.4e-96 355.5 286 68.9
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 5.7e-96 355.1 293 66.2
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.7e-95 353.6 253 70.4
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 2.8e-95 352.8 297 66.7
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 4.8e-95 352.1 325 60.6
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.1e-94 350.9 305 61.0
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.1e-94 350.9 303 62.0
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.8e-94 350.1 283 64.7
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 9.1e-94 347.8 289 64.4
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.6e-93 347.1 323 57.0
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 3.5e-93 345.9 302 64.2
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 8.5e-92 341.3 284 67.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.5e-91 340.5 270 67.4
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 2.5e-91 339.7 312 60.3
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.2e-90 337.4 253 67.6
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 1.6e-90 337.0 308 61.4
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.7e-90 335.5 235 70.2
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.4e-89 334.0 260 65.4
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 4.0e-89 332.4 215 74.9
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 6.8e-89 331.6 215 74.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.2e-88 330.9 295 65.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.0e-88 330.1 332 59.9
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.0e-88 330.1 253 67.6
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 7.5e-88 328.2 308 58.8
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 9.8e-88 327.8 293 63.5
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 4.9e-87 325.5 327 59.0
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.3e-87 325.1 242 70.2
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.3e-87 325.1 372 52.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.4e-86 323.9 288 63.9
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.8e-86 323.6 297 57.6
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 5.4e-86 322.0 301 59.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.0e-85 320.1 211 72.0
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 3.5e-85 319.3 318 59.4
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 4.5e-85 318.9 306 60.8
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 4.5e-85 318.9 239 71.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 5.9e-85 318.5 321 59.5
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.7e-84 317.0 288 59.4
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.9e-84 316.2 320 56.2
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 3.8e-84 315.8 188 79.3
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 5.0e-84 315.5 305 56.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 6.6e-84 315.1 248 65.7
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.3e-83 312.8 306 60.5
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 7.3e-83 311.6 230 68.3
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.6e-82 310.5 296 59.1
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 2.1e-82 310.1 201 76.6
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.0e-81 307.8 326 57.7
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.0e-81 307.8 295 60.0
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.0e-81 307.8 318 58.2
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.4e-81 307.4 300 60.3
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 3.0e-81 306.2 326 57.4
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.0e-81 305.8 290 57.2
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 4.4e-80 302.4 301 61.5
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 5.7e-80 302.0 310 60.3
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.3e-79 300.8 227 67.8
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-79 300.8 310 60.0
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.7e-79 300.4 315 55.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 4.9e-79 298.9 188 74.5
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 6.4e-79 298.5 314 58.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 6.4e-79 298.5 314 58.3
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.2e-77 294.3 312 55.1
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.2e-77 294.3 257 61.5
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.7e-76 290.4 248 63.3
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 5.0e-76 288.9 289 58.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.5e-75 287.3 229 65.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 4.3e-75 285.8 312 54.8
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.3e-75 285.8 312 54.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 4.3e-75 285.8 285 57.5
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 7.3e-75 285.0 305 54.1
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.1e-74 283.5 292 56.8
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 7.3e-67 258.5 234 56.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.8e-66 256.5 252 60.3
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 2.3e-65 253.4 246 58.1
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.7e-61 240.0 291 48.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.6e-59 232.3 287 48.4
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 4.7e-58 229.2 140 80.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 5.2e-57 225.7 242 47.5
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.9e-55 219.9 265 54.7
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.1e-53 213.8 289 43.9
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 4.9e-47 192.6 137 73.0
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 1.1e-46 191.4 124 71.8
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 3.2e-46 189.9 266 44.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.4e-38 163.7 152 56.6
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 2.1e-37 160.6 99 78.8
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.7e-37 160.2 97 80.4
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.3e-36 157.9 177 46.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 3.6e-34 149.8 250 38.8
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.4e-33 147.1 233 39.1
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-26 122.1 223 31.4
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 6.9e-25 119.0 72 80.6
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 2.0e-24 117.5 149 52.3
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.2e-21 108.2 207 32.4
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 6.7e-20 102.4 150 43.3
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-16 91.7 151 43.0
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.6e-13 79.7 226 29.6
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.7e-12 75.5 184 29.9
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 4.5e-08 63.2 96 31.2
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 4.5e-08 63.2 62 53.2
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 2.9e-07 60.5 87 48.3


User provided reference genes

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