Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 3.5e-297 1024.2 529 100.0
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 1.0e-285 986.1 509 100.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 2.0e-183 646.4 531 64.0
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 3.4e-183 645.6 531 63.7
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 2.3e-179 632.9 551 61.0
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 7.5e-167 591.3 535 58.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 1.1e-162 577.4 535 57.6
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 3.7e-150 535.8 535 54.0
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.1e-148 530.0 536 53.5
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 8.1e-145 518.1 535 52.1
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 8.9e-144 514.6 535 52.1
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 9.9e-143 511.1 534 52.2
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 5.4e-141 505.4 533 52.0
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 7.1e-141 505.0 533 51.0
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 9.2e-141 504.6 546 50.5
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 4.6e-140 502.3 532 51.9
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.7e-139 500.4 598 47.8
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 2.3e-139 500.0 536 51.1
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 2.3e-139 500.0 540 50.6
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 2.3e-139 500.0 587 47.9
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 2.8e-137 493.0 535 50.8
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 4.0e-136 489.2 534 49.8
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 2.0e-135 486.9 537 49.7
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 2.0e-135 486.9 532 48.9
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 4.4e-135 485.7 531 51.0
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 3.8e-134 482.6 531 50.7
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 3.8e-134 482.6 532 50.4
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 6.4e-134 481.9 533 48.0
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 1.9e-133 480.3 532 47.6
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 4.2e-133 479.2 639 44.8
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 7.8e-132 474.9 533 46.7
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 1.7e-131 473.8 542 48.5
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 1.7e-131 473.8 539 48.1
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 8.7e-131 471.5 541 48.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.7e-131 471.5 541 49.0
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 5.6e-130 468.8 536 47.8
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 7.3e-130 468.4 533 46.3
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.6e-129 466.1 541 48.2
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 3.6e-129 466.1 533 46.2
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 4.8e-129 465.7 532 49.1
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 1.1e-128 464.5 532 49.4
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.4e-128 463.4 534 46.4
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 2.4e-128 463.4 534 47.6
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.2e-127 461.1 543 47.7
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 2.0e-127 460.3 535 47.7
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 2.0e-127 460.3 534 47.4
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 2.0e-127 460.3 543 47.7
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.4e-127 459.5 541 47.7
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 4.5e-127 459.1 531 46.7
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 4.5e-127 459.1 543 47.5
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 5.8e-127 458.8 533 47.7
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 7.6e-127 458.4 543 46.2
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 3.8e-126 456.1 532 46.8
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 4.9e-126 455.7 536 49.1
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 3.2e-125 453.0 544 46.1
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 5.4e-125 452.2 556 45.0
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 5.4e-125 452.2 539 46.6
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 5.4e-125 452.2 592 43.8
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 7.1e-125 451.8 535 46.7
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.6e-124 450.7 545 47.2
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 3.5e-124 449.5 539 45.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 4.6e-124 449.1 549 44.6
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 2.3e-123 446.8 532 45.5
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 4.3e-122 442.6 536 47.2
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 4.3e-122 442.6 532 45.5
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 4.3e-122 442.6 514 45.9
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 6.2e-121 438.7 531 46.3
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 2.4e-120 436.8 601 43.6
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 2.0e-119 433.7 538 45.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 2.6e-119 433.3 537 47.1
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 2.6e-119 433.3 537 47.1
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 2.9e-118 429.9 532 46.6
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 6.4e-118 428.7 542 45.9
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 6.4e-118 428.7 532 47.0
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 6.4e-118 428.7 534 46.3
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 1.1e-117 427.9 530 45.7
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 1.1e-117 427.9 530 46.0
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.9e-117 427.2 505 46.9
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 3.5e-116 422.9 532 46.6
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 7.9e-116 421.8 542 45.9
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 2.3e-115 420.2 550 44.7
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 6.7e-115 418.7 528 46.4
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 1.1e-114 417.9 466 48.3
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 1.4e-112 411.0 554 44.0
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 1.8e-112 410.6 554 44.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 5.8e-111 405.6 512 45.9
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 7.6e-111 405.2 537 43.4
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.2e-100 371.3 466 46.6
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 2.3e-99 367.1 535 40.9
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 4.7e-92 342.8 583 38.8
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 5.1e-91 339.3 376 50.3
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 8.5e-86 322.0 421 43.9
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 3.5e-79 300.1 371 45.8
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 3.2e-69 266.9 306 48.7
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 9.8e-66 255.4 235 56.2
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 1.4e-64 251.5 256 54.3
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 2.1e-60 237.7 262 50.4
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 3.4e-58 230.3 576 29.7
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 2.0e-55 221.1 359 38.7
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 5.0e-54 216.5 234 47.4
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 1.9e-53 214.5 569 28.1
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 7.5e-50 202.6 240 48.3
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 3.0e-46 190.7 530 27.2
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 8.6e-46 189.1 520 28.5
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 1.2e-44 185.3 488 32.0
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 6.4e-41 172.9 164 53.0
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 1.6e-39 168.3 259 41.7
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 5.1e-38 163.3 232 41.4
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.7e-33 147.1 284 34.5
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 4.7e-28 130.2 156 45.5
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 8.1e-28 129.4 161 46.6
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 7.6e-26 122.9 214 35.0
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.2e-23 115.5 128 46.9
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 4.6e-23 113.6 157 40.8
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.0e-22 112.5 153 41.8
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 5.6e-21 106.7 161 39.8
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.3e-19 100.1 104 49.0
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 1.2e-18 99.0 129 41.9
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.9e-16 91.7 92 52.2
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 1.6e-12 78.6 72 54.2
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 5.8e-10 70.1 61 60.7
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 3.2e-08 64.3 86 40.7
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 9.3e-08 62.8 75 41.3
EL10Ac4g08160 Beta vulgaris HOM05D003492 ORTHO05D090266 3.5e-07 60.8 41 61.0
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 4.6e-07 60.5 75 49.3
MBI08_g18763_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D010488 1.0e-06 59.3 42 73.8
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.3e-06 58.9 134 31.3
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 3.9e-06 57.4 49 57.1
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 3.9e-06 57.4 82 36.6


User provided reference genes

Program Settings