Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 0.0e+00 1243.0 631 100.0
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 0.0e+00 1243.0 631 100.0
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.4e-305 1050.4 698 79.7
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 1.9e-209 733.0 660 59.4
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 9.2e-196 687.6 677 55.5
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 6.0e-195 684.9 638 59.1
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 4.6e-179 632.1 676 52.8
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 7.3e-177 624.8 666 53.5
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 1.2e-176 624.0 678 52.2
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.6e-174 616.3 643 54.1
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.7e-173 613.6 675 50.8
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 2.2e-173 613.2 675 52.1
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 8.4e-173 611.3 672 51.8
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 2.3e-170 603.2 671 51.1
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 3.9e-170 602.4 683 50.8
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 5.1e-170 602.1 677 51.6
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 6.6e-170 601.7 679 50.5
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 1.2e-168 597.4 690 50.9
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 4.7e-168 595.5 675 49.9
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 6.9e-167 591.7 687 49.6
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 1.2e-163 580.9 676 50.4
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 1.2e-163 580.9 676 50.4
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 6.0e-163 578.6 674 49.9
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 5.1e-162 575.5 679 48.5
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 6.6e-162 575.1 663 50.5
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.5e-161 573.9 605 54.4
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.6e-160 570.5 677 48.2
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 1.8e-159 567.0 660 50.0
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 2.6e-158 563.1 676 49.0
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.4e-157 558.1 668 48.4
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 8.4e-157 558.1 683 49.0
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 2.4e-156 556.6 667 49.9
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 2.4e-156 556.6 668 48.2
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 7.1e-156 555.1 665 48.7
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 9.3e-156 554.7 654 48.5
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 9.3e-156 554.7 665 49.9
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 9.3e-156 554.7 518 59.1
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 3.5e-155 552.7 622 50.6
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 7.9e-155 551.6 672 48.2
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 2.3e-154 550.1 655 48.9
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 8.7e-154 548.1 676 47.9
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.4e-153 545.0 601 49.6
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 6.9e-151 538.5 635 49.8
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.6e-150 536.6 681 45.8
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 4.5e-150 535.8 598 51.5
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 7.6e-150 535.0 665 47.7
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 2.2e-149 533.5 602 50.5
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 3.8e-149 532.7 606 50.8
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 6.4e-149 531.9 555 53.3
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 5.5e-148 528.9 682 46.5
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-147 527.3 605 50.9
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 4.6e-147 525.8 652 46.8
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.8e-146 523.9 658 48.2
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 3.0e-146 523.1 669 47.1
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 1.1e-145 521.2 670 46.1
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 2.5e-145 520.0 663 48.6
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.1e-144 516.9 679 47.7
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 2.8e-144 516.5 725 44.0
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 3.7e-144 516.2 663 46.5
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 4.8e-144 515.8 658 48.0
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 3.1e-143 513.1 608 50.0
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 6.9e-143 511.9 733 42.8
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 6.9e-143 511.9 700 43.9
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 5.8e-142 508.8 695 43.7
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.7e-141 507.3 755 41.6
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 2.2e-141 506.9 611 48.0
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 2.5e-140 503.4 736 41.7
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.5e-140 503.4 628 47.6
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 4.2e-140 502.7 572 48.6
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 4.6e-139 499.2 520 52.1
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.8e-138 497.3 727 41.7
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.8e-138 497.3 597 49.1
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 1.8e-138 497.3 584 49.8
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.3e-137 493.0 544 49.3
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.3e-137 493.0 608 46.9
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 5.7e-137 492.3 607 46.5
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 7.4e-137 491.9 601 47.1
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 9.7e-137 491.5 570 49.6
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.2e-136 488.4 608 46.5
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.1e-135 488.0 533 50.3
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 1.5e-134 484.2 606 47.2
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.0e-134 483.8 604 48.2
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 3.4e-134 483.0 608 46.2
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 7.7e-134 481.9 596 46.6
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 2.2e-133 480.3 659 44.6
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.8e-133 479.6 627 45.3
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 8.5e-133 478.4 675 44.7
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 4.2e-132 476.1 619 45.6
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 5.5e-132 475.7 743 40.2
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.2e-132 475.3 606 46.0
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 7.9e-131 471.9 606 44.2
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 7.9e-131 471.9 616 45.5
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 2.3e-130 470.3 613 45.0
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 3.0e-130 469.9 663 43.9
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 3.0e-130 469.9 686 41.5
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 5.1e-130 469.2 613 45.0
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 6.7e-130 468.8 661 45.2
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 8.8e-130 468.4 607 46.5
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 6.3e-128 462.2 605 45.0
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 8.2e-128 461.8 589 46.9
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 8.2e-128 461.8 595 45.4
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 6.9e-127 458.8 614 45.8
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.0e-125 454.9 596 46.3
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 1.7e-125 454.1 672 41.2
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.7e-125 454.1 592 44.6
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 6.5e-125 452.2 602 43.9
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 6.5e-125 452.2 598 44.3
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.5e-124 450.3 597 44.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 4.2e-124 449.5 589 43.5
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 4.2e-124 449.5 606 45.4
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 8.8e-122 441.8 635 42.2
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 2.0e-121 440.7 660 43.5
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.6e-121 440.3 696 40.7
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 2.2e-120 437.2 589 44.1
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 2.2e-120 437.2 590 44.4
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 3.7e-120 436.4 591 44.2
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 4.8e-120 436.0 607 42.8
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 6.3e-120 435.6 589 44.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 8.2e-120 435.3 591 44.2
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 1.9e-116 424.1 635 40.9
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.2e-112 410.6 560 44.5
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.7e-107 393.7 628 39.5
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 1.4e-106 391.3 655 38.6
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 8.8e-106 388.7 603 41.8
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 7.5e-105 385.6 524 42.9
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 3.1e-103 380.2 604 40.2
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 2.0e-102 377.5 610 39.2
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.9e-102 375.9 462 48.3
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.2e-100 369.8 599 38.6
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.6e-99 367.9 632 38.3
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.1e-99 367.5 587 41.9
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 4.0e-98 363.2 610 38.5
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 2.3e-93 347.4 586 38.2
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 2.9e-93 347.1 576 38.5
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 4.7e-91 339.7 575 36.3
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.1e-87 328.6 555 36.4
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.4e-87 326.2 621 34.1
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.4e-87 326.2 621 34.1
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.5e-84 317.4 298 58.1
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 2.5e-84 317.4 589 35.3
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 9.5e-84 315.5 621 36.1
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.7e-78 297.4 579 37.0
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 7.3e-76 289.3 404 43.6
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 2.4e-71 274.2 425 39.5
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 5.4e-71 273.1 381 43.6
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 6.0e-70 269.6 363 42.4
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.3e-68 263.8 314 47.8
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.2e-67 261.9 405 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 6.8e-66 256.1 532 32.9
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 7.6e-65 252.7 264 54.5
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 2.9e-64 250.8 438 37.4
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 1.9e-63 248.1 273 51.3
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.0e-61 242.3 337 42.1
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 2.3e-61 241.1 307 48.9
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 2.9e-56 224.2 261 49.8
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 2.3e-53 214.5 372 36.6
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 3.2e-47 194.1 215 49.3
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.3e-45 188.7 227 46.7
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 1.6e-43 181.8 203 47.8
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.8e-42 178.3 163 52.8
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 3.4e-41 174.1 230 44.3
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 4.8e-35 153.7 176 47.7
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 2.0e-33 148.3 109 64.2
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 4.2e-31 140.6 287 30.3
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 9.3e-31 139.4 235 38.7
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 8.2e-27 126.3 297 29.3
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 1.2e-25 122.5 210 36.2
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 5.8e-25 120.2 145 49.0
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 2.2e-24 118.2 232 32.3
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-24 117.5 186 36.0
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 9.3e-23 112.8 272 27.6
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 3.5e-22 110.9 190 35.8
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 4.6e-22 110.5 140 45.0
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.9e-17 93.6 516 22.5
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 5.1e-13 80.5 397 22.7
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 1.3e-11 75.9 70 52.9
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 1.3e-11 75.9 70 52.9
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 1.3e-11 75.9 60 58.3
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 1.3e-11 75.9 143 36.4
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 3.1e-10 71.2 81 45.7
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 1.0e-08 66.2 78 47.4
Prupe.7G186500 Prunus persica HOM05D003539 ORTHO05D004111 3.8e-08 64.3 102 41.2
RcHm_v2.0_Chr2g0096831 Rosa chinensis HOM05D003539 ORTHO05D004111 4.2e-07 60.8 103 35.0
Ciclev10010647m.g Citrus clementina HOM05D003539 ORTHO05D004111 7.2e-07 60.1 91 45.1
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 1.6e-06 58.9 68 47.1


User provided reference genes

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