Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 0.0e+00 2516.1 1439 100.0
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 0.0e+00 2516.1 1439 100.0
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.1e-249 867.8 1296 45.6
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.3e-245 854.4 1345 45.4
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.1e-209 734.9 1324 41.7
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.7e-176 624.8 1336 37.8
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 6.3e-176 622.9 1466 36.2
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 7.7e-174 615.9 1500 35.9
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 1.5e-172 611.7 1433 36.9
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 6.8e-170 602.8 1432 36.4
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.7e-166 590.9 1415 35.1
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.7e-166 590.9 1415 35.1
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 6.6e-165 586.3 1421 35.5
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 9.5e-164 582.4 1492 35.1
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 9.5e-164 582.4 1423 35.6
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 2.1e-163 581.3 1477 34.3
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 4.7e-163 580.1 1477 34.6
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 4.4e-161 573.5 1445 35.2
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.7e-157 561.6 1433 34.6
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 9.5e-156 555.8 1416 34.5
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 1.1e-154 552.4 1422 35.0
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 5.8e-153 546.6 1513 32.9
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 2.4e-151 541.2 1426 33.2
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 1.2e-147 528.9 1454 33.8
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.1e-146 525.8 1366 34.3
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 8.9e-146 522.7 1390 34.0
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.3e-141 508.1 1383 32.8
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.5e-140 505.4 1532 31.3
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 7.3e-140 503.1 1446 32.3
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.6e-140 502.7 1473 32.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 4.7e-139 500.4 1422 31.8
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.4e-138 498.0 1450 32.2
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.7e-136 491.9 1377 33.6
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.9e-135 488.4 1343 33.4
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 5.4e-135 486.9 1575 31.9
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 2.1e-134 485.0 1477 31.6
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 3.9e-133 480.7 1453 32.2
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 8.7e-133 479.6 872 41.6
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 7.3e-132 476.5 1514 32.2
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 9.6e-132 476.1 1456 31.3
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.3e-131 475.7 1336 32.7
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.6e-131 474.2 1391 32.6
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 2.4e-130 471.5 1366 32.8
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.4e-130 471.5 1386 32.9
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 1.2e-129 469.2 1366 34.1
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.4e-129 467.6 1438 31.4
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 9.9e-129 466.1 1407 32.6
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.3e-128 465.7 1445 31.5
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 2.9e-128 464.5 1543 31.0
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 7.9e-126 456.4 1484 31.0
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.0e-125 456.1 1411 32.6
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.3e-125 455.7 1392 32.0
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.7e-125 455.3 1466 30.7
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 3.0e-125 454.5 1478 31.0
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 3.9e-125 454.1 1382 32.2
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 5.1e-125 453.8 1403 31.9
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 6.6e-125 453.4 1377 32.2
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 8.7e-125 453.0 1457 30.8
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 3.6e-123 447.6 1424 31.3
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 8.1e-123 446.4 1395 31.0
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 4.9e-120 437.2 1410 32.2
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.1e-119 436.0 1410 30.8
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 5.5e-119 433.7 1429 31.0
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 7.1e-119 433.3 1484 30.9
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.2e-118 432.6 1434 30.3
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 1.2e-118 432.6 1467 30.3
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 3.5e-118 431.0 1429 30.9
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 3.9e-117 427.6 1172 33.1
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 8.7e-117 426.4 1376 32.6
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 3.3e-116 424.5 1434 30.8
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 8.1e-115 419.9 1332 31.0
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 2.4e-114 418.3 1373 31.2
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.4e-114 418.3 1469 30.3
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.4e-113 414.5 1338 31.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 4.9e-112 410.6 1403 30.4
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 6.5e-112 410.2 1371 30.4
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 5.5e-111 407.1 1365 30.3
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 7.1e-111 406.8 1402 30.7
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 3.3e-108 397.9 1396 29.8
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.2e-105 389.4 874 38.4
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.2e-105 389.4 961 36.0
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.1e-103 382.9 1341 30.7
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.8e-101 375.6 1434 29.8
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 8.2e-99 366.7 876 34.7
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.5e-97 360.9 1324 29.7
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 8.8e-85 320.1 682 34.3
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.5e-84 319.3 1400 28.7
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.7e-84 316.6 846 33.9
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 2.8e-83 315.1 1373 28.6
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 8.0e-70 270.4 770 34.0
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.2e-69 267.7 861 31.8
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.6e-57 229.6 986 28.5
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.0e-48 200.3 181 56.4
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 1.5e-47 196.4 580 29.3
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-47 196.4 465 34.6
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 5.4e-42 177.9 759 29.8
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.9e-40 171.8 575 29.9
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.9e-39 169.5 528 29.9
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 5.2e-37 161.4 1376 24.9
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 2.0e-36 159.5 748 26.1
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.4e-36 158.7 495 29.7
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 9.8e-36 157.1 539 29.5
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 1.3e-35 156.8 1408 24.1
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.7e-35 156.4 164 53.0
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.2e-35 156.0 146 48.6
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.4e-34 153.3 724 27.1
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 6.0e-33 147.9 966 27.6
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.9e-31 142.9 360 36.9
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 2.8e-30 139.0 609 29.2
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 3.1e-29 135.6 982 22.8
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.0e-28 132.9 235 41.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.0e-28 132.9 377 34.5
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 9.9e-28 130.6 173 42.2
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.2e-22 113.6 181 40.3
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 2.1e-22 112.8 251 37.5
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.4e-21 110.2 476 28.2
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.4e-21 109.4 384 31.5
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 4.2e-18 98.6 194 34.5
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 9.3e-18 97.4 732 24.9
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 6.0e-17 94.7 89 51.7
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 5.6e-15 88.2 107 44.9
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 4.8e-14 85.1 280 32.9
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.1e-13 84.0 104 39.4
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 3.1e-13 82.4 633 26.7
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 7.1e-10 71.2 115 45.2
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.7e-08 64.3 59 45.8
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 2.5e-07 62.8 121 33.9


User provided reference genes

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