Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 4.8e-180 634.4 326 100.0
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.7e-119 431.8 339 71.7
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 4.4e-117 425.2 338 69.8
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 2.5e-112 409.5 343 69.4
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 3.7e-108 395.6 318 70.1
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.1e-99 365.5 242 78.9
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.0e-97 360.9 232 82.3
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.3e-97 360.5 247 77.3
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.7e-97 360.1 306 66.3
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 3.0e-97 359.4 242 78.9
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.0e-97 359.4 220 84.5
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 3.9e-97 359.0 218 85.3
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 5.0e-97 358.6 232 81.9
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 5.0e-97 358.6 220 84.5
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.1e-96 357.5 271 72.7
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.1e-96 357.5 235 80.9
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.6e-96 355.1 242 78.1
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 5.6e-96 355.1 242 78.1
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 7.3e-96 354.8 219 84.0
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.6e-95 353.6 220 83.2
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.6e-95 353.6 232 81.9
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.6e-95 353.6 242 77.7
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 2.1e-95 353.2 243 77.0
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.8e-95 352.8 217 82.0
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 2.8e-95 352.8 241 78.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 4.7e-95 352.1 242 76.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 4.7e-95 352.1 330 62.1
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.4e-94 350.5 249 75.9
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.8e-94 350.1 244 75.4
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 5.2e-94 348.6 241 74.7
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 6.8e-94 348.2 221 81.4
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 6.8e-94 348.2 221 81.4
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.2e-93 347.4 241 75.1
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.5e-93 347.1 232 77.6
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.5e-93 347.1 232 77.6
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.5e-93 347.1 245 76.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.6e-93 346.3 219 83.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 4.4e-93 345.5 220 81.4
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 5.8e-93 345.1 215 80.5
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 7.5e-93 344.7 241 74.7
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 9.9e-93 344.4 228 78.1
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 9.9e-93 344.4 329 59.0
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 9.9e-93 344.4 319 62.4
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.3e-92 344.0 220 80.9
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.3e-92 344.0 238 76.5
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.2e-92 343.2 220 80.5
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 6.4e-92 341.7 233 77.3
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.1e-91 340.9 246 74.0
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.9e-91 340.1 213 80.3
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.4e-91 339.7 317 62.5
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.4e-91 339.7 233 77.7
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.2e-91 339.3 252 72.2
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 3.2e-91 339.3 219 79.5
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 4.1e-91 339.0 206 84.0
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 5.4e-91 338.6 233 74.2
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.6e-90 337.0 213 78.9
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.6e-90 337.0 240 73.8
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-90 336.7 225 79.1
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 2.1e-90 336.7 239 74.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.1e-90 336.7 247 73.3
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.7e-90 336.3 225 79.1
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 4.6e-90 335.5 209 80.9
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 4.6e-90 335.5 225 78.7
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 4.6e-90 335.5 225 79.1
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 4.6e-90 335.5 203 83.3
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 4.6e-90 335.5 225 78.7
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 6.0e-90 335.1 232 74.1
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 7.8e-90 334.7 209 83.3
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.3e-89 334.0 250 70.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 3.9e-89 332.4 211 82.5
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.9e-89 332.4 223 78.0
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 3.9e-89 332.4 213 81.2
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 6.6e-89 331.6 223 78.5
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 8.6e-89 331.3 223 78.5
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.6e-89 331.3 314 59.9
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.1e-88 330.9 240 71.2
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 1.5e-88 330.5 225 77.3
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 1.5e-88 330.5 190 88.4
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 1.9e-88 330.1 223 78.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.9e-88 330.1 315 60.0
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.5e-88 329.7 211 81.5
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 2.5e-88 329.7 209 81.3
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.5e-88 329.7 209 81.3
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.5e-88 329.7 209 81.3
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.3e-88 328.9 209 80.9
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 5.6e-88 328.6 224 78.1
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.6e-87 327.0 209 80.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 2.8e-87 326.2 209 81.3
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 4.7e-87 325.5 225 75.6
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.4e-86 323.9 216 77.8
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 1.4e-86 323.9 207 81.2
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.8e-86 323.6 240 69.6
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 1.8e-86 323.6 216 76.9
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 4.0e-86 322.4 244 70.9
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 6.8e-86 321.6 207 80.7
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.5e-85 320.5 251 68.1
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 5.8e-85 318.5 322 58.7
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 8.4e-84 314.7 301 60.5
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.4e-83 313.9 204 77.5
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 2.4e-83 313.2 204 80.9
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.2e-83 312.8 243 67.5
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 5.4e-83 312.0 224 75.0
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.1e-82 310.1 189 81.5
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 3.3e-80 302.8 165 91.5
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 3.8e-76 289.3 267 61.8
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.6e-74 282.3 228 63.6
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.5e-72 277.3 209 69.9
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 7.3e-72 275.0 224 67.4
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 8.4e-68 261.5 211 70.1
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.1e-62 244.6 237 57.0
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 2.4e-62 243.4 183 65.0
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.6e-61 240.0 142 81.7
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 5.3e-54 215.7 213 53.1
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.0e-53 213.8 190 58.4
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.7e-52 210.7 165 61.8
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.0e-49 201.4 181 55.2
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 7.6e-45 185.3 177 51.4
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 1.8e-41 174.1 211 45.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.9e-40 170.6 131 72.5
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 2.2e-39 167.2 143 64.3
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.0e-33 148.3 158 55.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 2.1e-26 124.0 143 41.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.7e-23 113.2 65 87.7
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 9.4e-19 98.6 77 74.0
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.5e-16 91.3 91 57.1
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 7.5e-16 89.0 53 83.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.1e-06 57.0 141 24.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 4.1e-06 56.6 141 24.8
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 4.1e-06 56.6 126 25.4
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 4.1e-06 56.6 141 26.2
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.4e-06 56.2 141 24.1
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 5.4e-06 56.2 141 25.5
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 7.0e-06 55.8 141 25.5
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 9.1e-06 55.5 134 26.1
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 9.1e-06 55.5 141 23.4
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.1e-06 55.5 141 24.1
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 9.1e-06 55.5 141 24.1
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 9.1e-06 55.5 141 25.5
TWI60G0325 Tripterygium wilfordii HOM05D002462 ORTHO05D002893 9.1e-06 55.5 126 27.0


User provided reference genes

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