Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.4e-287 990.3 511 100.0
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.5e-108 397.5 513 51.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.8e-72 277.7 511 38.7
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 6.5e-67 259.2 514 37.2
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-66 258.1 511 37.6
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.3e-62 242.3 517 36.0
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 7.7e-60 235.7 507 36.1
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.0e-49 199.1 269 46.8
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.3e-42 176.8 480 31.9
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.8e-41 174.1 439 32.8
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.3e-40 171.0 486 30.5
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.9e-38 164.1 346 34.7
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 8.3e-38 162.5 474 30.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.1e-37 162.2 420 31.2
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.9e-37 161.4 474 31.4
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.9e-37 161.4 420 31.9
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.0e-37 159.5 420 31.2
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.0e-37 159.5 450 31.3
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 9.2e-37 159.1 456 28.9
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.6e-36 158.3 486 29.0
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.5e-36 157.1 420 32.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 7.8e-36 156.0 420 30.7
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.3e-35 154.5 420 32.1
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 2.3e-35 154.5 504 29.6
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.9e-35 153.7 377 33.4
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 8.6e-35 152.5 420 31.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 8.6e-35 152.5 456 30.9
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.5e-34 151.8 471 30.6
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.9e-34 151.4 420 29.8
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.5e-34 151.0 419 31.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 5.6e-34 149.8 419 29.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 9.5e-34 149.1 508 28.0
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.2e-33 148.7 467 28.3
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-33 148.3 423 30.5
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 3.6e-33 147.1 420 29.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.6e-33 147.1 198 43.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.4e-32 145.2 457 28.9
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.4e-32 145.2 420 30.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.1e-32 144.1 457 28.7
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.0e-32 143.7 420 29.0
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 5.2e-32 143.3 420 29.5
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.0e-31 141.4 468 28.8
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.6e-31 141.0 434 31.3
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 4.4e-31 140.2 460 27.4
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 7.5e-31 139.4 420 29.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 7.5e-31 139.4 437 28.8
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.9e-30 137.5 420 28.6
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.7e-30 137.1 437 28.4
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 6.4e-30 136.3 211 40.8
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 8.3e-30 136.0 511 27.0
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 8.3e-30 136.0 420 28.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 8.3e-30 136.0 420 29.0
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.9e-29 134.8 420 27.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.4e-29 134.4 480 29.0
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 3.2e-29 134.0 451 26.8
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 7.1e-29 132.9 456 27.2
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.2e-29 132.5 448 27.2
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.2e-29 132.5 172 44.2
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.2e-29 132.5 397 29.2
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-28 131.3 448 27.2
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.1e-28 131.3 458 29.3
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 2.1e-28 131.3 221 38.5
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 2.7e-28 131.0 420 27.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.6e-28 130.2 448 28.3
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 4.6e-28 130.2 437 27.9
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 1.3e-27 128.6 381 28.9
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-27 128.3 176 42.0
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.7e-27 128.3 420 27.1
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.9e-27 127.1 213 37.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.1e-27 126.7 209 40.2
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 6.6e-27 126.3 419 26.5
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 6.6e-27 126.3 433 29.3
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 6.6e-27 126.3 176 43.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 6.6e-27 126.3 480 25.2
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 8.6e-27 125.9 421 27.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.9e-26 124.8 433 27.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.9e-26 124.8 441 26.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 3.3e-26 124.0 420 27.6
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 7.3e-26 122.9 462 26.0
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 7.3e-26 122.9 421 27.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.3e-26 122.9 441 26.5
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.2e-25 122.1 237 35.4
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.8e-25 120.9 176 39.8
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 2.8e-25 120.9 424 24.8
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.7e-25 120.2 193 40.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 6.2e-25 119.8 424 24.3
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 6.2e-25 119.8 424 24.3
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 8.1e-25 119.4 377 27.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.4e-24 118.6 168 41.7
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.4e-24 118.6 419 24.6
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 3.1e-24 117.5 354 29.7
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.5e-23 115.2 157 40.8
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.6e-23 114.4 420 24.8
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 7.6e-23 112.8 419 24.3
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 7.6e-23 112.8 419 24.6
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 9.9e-23 112.5 416 24.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.7e-22 111.7 419 24.6
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.2e-22 111.3 419 24.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.2e-22 111.3 208 34.6
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.9e-21 108.2 419 24.1
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.2e-21 107.1 432 25.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.4e-21 106.7 381 26.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 7.1e-21 106.3 372 26.3
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 9.2e-21 105.9 408 25.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.6e-20 105.1 143 43.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.6e-20 103.6 440 23.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 4.6e-20 103.6 177 37.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.6e-20 103.6 178 36.0
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 6.0e-20 103.2 458 25.3
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.8e-20 102.8 237 32.5
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 7.8e-20 102.8 422 25.4
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.7e-19 101.7 420 23.6
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 8.7e-19 99.4 329 30.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.1e-18 99.0 215 34.4
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 7.3e-18 96.3 420 23.3
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 9.6e-18 95.9 196 33.2
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.2e-17 95.5 454 24.7
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.8e-17 94.4 272 29.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.4e-16 91.3 105 50.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.9e-16 89.7 422 24.2
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.9e-16 89.7 319 27.6
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.2e-15 89.0 422 23.7
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-15 89.0 422 23.7
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.0e-15 88.2 319 28.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.4e-14 83.2 423 23.6
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.4e-13 80.1 82 53.7
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.4e-13 80.1 173 31.2
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.3e-13 79.3 82 52.4
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.2e-12 79.0 172 31.4
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.5e-12 77.4 82 48.8
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 6.0e-12 76.6 214 27.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.7e-11 75.1 420 22.4
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-11 74.7 82 48.8
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 5.1e-11 73.6 440 21.4
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.3e-10 70.9 116 37.9
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.6e-10 69.3 82 51.2
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 2.8e-09 67.8 75 49.3
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 6.2e-09 66.6 81 43.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 6.2e-09 66.6 81 43.2
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-08 65.1 124 33.9
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.1e-08 64.3 95 35.8
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.1e-08 64.3 83 45.8
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.5e-07 62.0 82 42.7
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.5e-07 62.0 101 35.6
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.5e-07 62.0 82 40.2
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 3.4e-07 60.8 83 41.0
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 5.8e-07 60.1 119 31.9
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 7.6e-07 59.7 82 40.2
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 1.3e-06 58.9 34 76.5
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.4e-06 56.6 78 39.7
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 8.4e-06 56.2 84 41.7


User provided reference genes

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