Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26404 Selenicereus undatus HOM05D007177 ORTHO05D008984 2.0e-175 619.0 312 100.0
AUR62032383 Chenopodium quinoa HOM05D007177 ORTHO05D008984 2.4e-120 436.0 269 78.8
Ah.10g025430 Amaranthus hybridus HOM05D007177 ORTHO05D008984 7.9e-116 421.0 265 78.1
CiPaw.08G015800 Carya illinoinensis HOM05D007177 ORTHO05D008984 3.9e-115 418.7 264 76.9
CiPaw.07G217700 Carya illinoinensis HOM05D007177 ORTHO05D008984 2.6e-114 416.0 263 76.8
Dinv35881 Davidia involucrata HOM05D007177 ORTHO05D008984 2.6e-114 416.0 271 74.9
AUR62024834 Chenopodium quinoa HOM05D007177 ORTHO05D008984 1.4e-112 410.2 286 71.7
GSVIVG01035726001 Vitis vinifera HOM05D007177 ORTHO05D008984 4.1e-112 408.7 263 73.4
TAR383G0793 Trochodendron aralioides HOM05D007177 ORTHO05D008984 2.0e-111 406.4 275 72.7
Ciclev10009098m.g Citrus clementina HOM05D007177 ORTHO05D008984 2.6e-111 406.0 263 73.4
QL12p031282 Quercus lobata HOM05D007177 ORTHO05D008984 3.4e-111 405.6 263 74.5
Hma1.2p1_0175F.1_g077220 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 1.7e-110 403.3 270 70.4
Atru.chr7.2324 Acer truncatum HOM05D007177 ORTHO05D008984 1.4e-109 400.2 263 72.6
CANSAT25G2101 Cannabis sativa HOM05D007177 ORTHO05D008984 1.9e-109 399.8 275 72.4
Potri.006G246500 Populus trichocarpa HOM05D007177 ORTHO05D008984 1.9e-109 399.8 265 74.0
Manes.16G068300 Manihot esculenta HOM05D007177 ORTHO05D008984 2.5e-109 399.4 265 73.6
Lj7A712G53 Lonicera japonica HOM05D007177 ORTHO05D008984 2.7e-108 396.0 267 72.7
Sabra06G0192800 Salix brachista HOM05D007177 ORTHO05D008984 2.7e-108 396.0 265 73.2
CSS0040333 Camellia sinensis var. sinensis HOM05D007177 ORTHO05D008984 4.7e-108 395.2 267 72.7
CAN.G21.13 Capsicum annuum HOM05D007177 ORTHO05D008984 1.1e-106 390.6 263 73.4
MD08G1136300 Malus domestica HOM05D007177 ORTHO05D008984 1.1e-106 390.6 268 69.0
DCAR_006262 Daucus carota HOM05D007177 ORTHO05D008984 4.4e-106 388.7 257 74.3
Thecc.09G144000 Theobroma cacao HOM05D007177 ORTHO05D008984 5.7e-106 388.3 260 73.1
Nn8g39274 Nelumbo nucifera HOM05D007177 ORTHO05D008984 7.4e-106 387.9 269 71.7
Duzib168G0166 Durio zibethinus HOM05D007177 ORTHO05D008984 9.7e-106 387.5 256 73.4
vmacro11111 Vaccinium macrocarpon HOM05D007177 ORTHO05D008984 3.7e-105 385.6 239 77.0
Eucgr.G02593 Eucalyptus grandis HOM05D007177 ORTHO05D008984 6.3e-105 384.8 267 71.5
Nitab4.5_0000125g0190 Nicotiana tabacum HOM05D007177 ORTHO05D008984 1.1e-104 384.0 261 73.2
RcHm_v2.0_Chr6g0312741 Rosa chinensis HOM05D007177 ORTHO05D008984 1.1e-104 384.0 240 74.2
Gohir.A06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.8e-104 383.3 249 74.3
Gohir.D06G048000 Gossypium hirsutum HOM05D007177 ORTHO05D008984 1.8e-104 383.3 249 74.3
Gorai.010G053800 Gossypium raimondii HOM05D007177 ORTHO05D008984 1.8e-104 383.3 249 74.3
Sopen08g021780 Solanum pennellii HOM05D007177 ORTHO05D008984 1.8e-104 383.3 264 73.1
MSTRG.11740 Avicennia marina HOM05D007177 ORTHO05D008984 4.1e-104 382.1 278 69.4
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 5.3e-104 381.7 244 74.2
Solyc08g067840.3 Solanum lycopersicum HOM05D007177 ORTHO05D008984 5.3e-104 381.7 264 72.7
Sed0014124 Sechium edule HOM05D007177 ORTHO05D008984 1.2e-103 380.6 266 70.7
Migut.A00273 Erythranthe guttata HOM05D007177 ORTHO05D008984 4.5e-103 378.6 298 64.8
FAN27G1396 Fragaria x ananassa HOM05D007177 ORTHO05D008984 4.5e-103 378.6 240 72.9
FvH4_2g30170 Fragaria vesca HOM05D007177 ORTHO05D008984 7.7e-103 377.9 240 72.5
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 1.0e-102 377.5 266 68.0
Nitab4.5_0009600g0010 Nicotiana tabacum HOM05D007177 ORTHO05D008984 1.0e-102 377.5 259 73.0
THA.LOC104815045 Tarenaya hassleriana HOM05D007177 ORTHO05D008984 1.0e-102 377.5 256 71.5
Cc08_g08290 Coffea canephora HOM05D007177 ORTHO05D008984 1.7e-102 376.7 256 73.0
BcaC04g19225 Brassica carinata HOM05D007177 ORTHO05D008984 3.8e-102 375.6 249 74.3
C09p65410 Brassica napus HOM05D007177 ORTHO05D008984 3.8e-102 375.6 249 74.3
BolC9t59366H Brassica oleracea HOM05D007177 ORTHO05D008984 3.8e-102 375.6 249 74.3
Aa31LG3G15740 Aethionema arabicum HOM05D007177 ORTHO05D008984 1.5e-101 373.6 251 73.3
MD15G1115400 Malus domestica HOM05D007177 ORTHO05D008984 2.5e-101 372.9 288 62.8
A10p26300 Brassica napus HOM05D007177 ORTHO05D008984 7.2e-101 371.3 244 74.6
BraA10t44687Z Brassica rapa HOM05D007177 ORTHO05D008984 7.2e-101 371.3 244 74.6
Thhalv10014231m.g Eutrema salsugineum HOM05D007177 ORTHO05D008984 9.4e-101 370.9 270 69.3
MELO3C011212.2 Cucumis melo HOM05D007177 ORTHO05D008984 1.2e-100 370.5 244 73.8
Sp6g32150 Schrenkiella parvula HOM05D007177 ORTHO05D008984 1.6e-100 370.2 270 68.9
TWI32G0279 Tripterygium wilfordii HOM05D007177 ORTHO05D008984 1.6e-100 370.2 253 70.8
CsaV3_2G031600 Cucumis sativus L. HOM05D007177 ORTHO05D008984 2.1e-100 369.8 244 73.8
BcaB08g37058 Brassica carinata HOM05D007177 ORTHO05D008984 1.4e-99 367.1 274 68.2
SalBow4G1425 Salvia bowleyana HOM05D007177 ORTHO05D008984 2.3e-99 366.3 274 67.9
Rhsim02G0187100 Rhododendron simsii HOM05D007177 ORTHO05D008984 3.0e-99 365.9 266 69.5
CARHR201780 Cardamine hirsuta HOM05D007177 ORTHO05D008984 3.3e-98 362.5 264 70.5
unitig_748.g7498 Utricularia gibba HOM05D007177 ORTHO05D008984 1.3e-97 360.5 248 72.6
HanXRQChr02g0048101 Helianthus annuus HOM05D007177 ORTHO05D008984 1.7e-97 360.1 285 61.4
Lalb_Chr23g0269021 Lupinus albus HOM05D007177 ORTHO05D008984 3.7e-97 359.0 251 71.3
Peaxi162Scf00105g01429 Petunia axillaris HOM05D007177 ORTHO05D008984 3.7e-97 359.0 237 73.4
AL6G22110 Arabidopsis lyrata HOM05D007177 ORTHO05D008984 6.3e-97 358.2 270 67.8
AT5G11450 Arabidopsis thaliana HOM05D007177 ORTHO05D008984 1.1e-96 357.5 269 68.0
Carub.0006s0990 Capsella rubella HOM05D007177 ORTHO05D008984 3.1e-96 355.9 249 72.3
Cpa.g.sc91.5 Carica papaya HOM05D007177 ORTHO05D008984 1.2e-95 354.0 218 77.1
CDE01G0003 Ceratophyllum demersum HOM05D007177 ORTHO05D008984 1.3e-94 350.5 271 63.8
arahy.Tifrunner.gnm1.ann1.JYH77Y Arachis hypogaea HOM05D007177 ORTHO05D008984 1.7e-94 350.1 252 69.0
Glyma.06G073600 Glycine max HOM05D007177 ORTHO05D008984 5.0e-94 348.6 251 67.3
Phvul.009G098000 Phaseolus vulgaris HOM05D007177 ORTHO05D008984 1.5e-93 347.1 251 67.3
Actinidia13290 Actinidia chinensis HOM05D007177 ORTHO05D008984 1.9e-93 346.7 247 69.2
VMungo1309G2383 Vigna mungo HOM05D007177 ORTHO05D008984 2.1e-92 343.2 251 66.1
PSO063G2030 Papaver somniferum HOM05D007177 ORTHO05D008984 6.1e-92 341.7 277 62.5
Zm00001eb159760 Zea mays HOM05D007177 ORTHO05D008984 6.1e-92 341.7 241 69.3
HPP92_021881 Vanilla planifolia HOM05D007177 ORTHO05D008984 8.0e-92 341.3 285 60.7
Lj1g0018262 Lotus japonicus HOM05D007177 ORTHO05D008984 1.8e-91 340.1 264 65.9
PSO782G2748 Papaver somniferum HOM05D007177 ORTHO05D008984 3.0e-91 339.3 277 61.7
Os01g0617900 Oryza sativa ssp. japonica HOM05D007177 ORTHO05D008984 3.4e-90 335.9 241 68.5
TPR.G34677 Trifolium pratense HOM05D007177 ORTHO05D008984 3.7e-89 332.4 259 64.1
Zm00001eb358300 Zea mays HOM05D007177 ORTHO05D008984 6.3e-89 331.6 241 68.0
EL10Ac2g02536 Beta vulgaris HOM05D007177 ORTHO05D008984 2.4e-88 329.7 313 57.2
Medtr3g108040 Medicago truncatula HOM05D007177 ORTHO05D008984 5.4e-88 328.6 213 71.8
ClCG08G012880 Citrullus lanatus HOM05D007177 ORTHO05D008984 2.9e-86 322.8 312 55.4
Psat5g027720 Pisum sativum HOM05D007177 ORTHO05D008984 3.8e-86 322.4 252 62.7
COL.COLO4_24067 Corchorus olitorius HOM05D007177 ORTHO05D008984 4.7e-84 315.5 268 61.9
AUR62011224 Chenopodium quinoa HOM05D007177 ORTHO05D008984 6.1e-84 315.1 265 62.6
arahy.Tifrunner.gnm1.ann1.22L7FB Arachis hypogaea HOM05D007177 ORTHO05D008984 5.7e-82 308.5 252 62.3
FAN24G2430 Fragaria x ananassa HOM05D007177 ORTHO05D008984 2.2e-81 306.6 212 68.9
Haze_21624 Corylus avellana HOM05D007177 ORTHO05D008984 7.0e-80 301.6 264 59.8
PGR102G2243 Punica granatum HOM05D007177 ORTHO05D008984 7.0e-80 301.6 284 57.7
Glyma.04G072300 Glycine max HOM05D007177 ORTHO05D008984 2.0e-79 300.1 237 63.3
Prupe.1G466600 Prunus persica HOM05D007177 ORTHO05D008984 1.3e-78 297.4 208 70.2
Aqoxy7G01836 Aquilegia oxysepala HOM05D007177 ORTHO05D008984 8.6e-78 294.7 261 58.6
ATR0037G062 Amborella trichopoda HOM05D007177 ORTHO05D008984 1.2e-74 284.3 183 73.8
FAN20G1087 Fragaria x ananassa HOM05D007177 ORTHO05D008984 2.7e-71 273.1 231 60.2
FAN15G3007 Fragaria x ananassa HOM05D007177 ORTHO05D008984 3.5e-71 272.7 208 64.4
SGA_v2.0_scaffold27G11496 Striga asiatica HOM05D007177 ORTHO05D008984 1.0e-70 271.2 238 61.8
Mapoly0103s0019 Marchantia polymorpha HOM05D007177 ORTHO05D008984 2.1e-68 263.5 304 49.3
Cfa013211 Carpinus fangiana HOM05D007177 ORTHO05D008984 4.7e-68 262.3 158 79.7
Pp3c27_2770 Physcomitrium patens HOM05D007177 ORTHO05D008984 3.1e-67 259.6 204 61.8
Ca_15697_v3 Cicer arietinum L. HOM05D007177 ORTHO05D008984 1.2e-66 257.7 204 64.2
Sc23g0007000 Simmondsia chinensis HOM05D007177 ORTHO05D008984 2.0e-58 230.3 174 69.0
Gohir.D06G048101 Gossypium hirsutum HOM05D007177 ORTHO05D008984 9.9e-42 174.9 101 78.2
SEGI_07055 Sequoiadendron giganteum HOM05D007177 ORTHO05D008984 1.2e-39 167.9 175 52.6
Cre07.g328200 Chlamydomonas reinhardtii HOM05D007177 ORTHO05D008984 1.0e-38 164.9 223 42.2
Hma1.2p1_0175F.1_g077230 Hydrangea macrophylla HOM05D007177 ORTHO05D008984 3.1e-35 153.3 107 68.2
MCO07G393 Micromonas commoda HOM05D007177 ORTHO05D008984 2.6e-26 123.6 196 35.7
Actinidia13424 Actinidia chinensis HOM05D007177 ORTHO05D008984 4.8e-12 76.3 50 76.0
AagrBONN_evm.TU.Sc2ySwM_117.3794 Anthoceros agrestis HOM05D007177 ORTHO05D008984 4.5e-10 69.7 52 67.3
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 2.5e-08 63.9 235 27.7
AUR62015046 Chenopodium quinoa HOM05D000133 ORTHO05D000259 1.2e-07 61.6 44 70.5
AUR62017505 Chenopodium quinoa HOM05D000133 ORTHO05D000259 1.2e-07 61.6 44 70.5
Ah.01g013740 Amaranthus hybridus HOM05D000133 ORTHO05D000259 1.6e-07 61.2 44 68.2
Nn1g07450 Nelumbo nucifera HOM05D000133 ORTHO05D000259 1.6e-07 61.2 44 68.2
Nn1g03237 Nelumbo nucifera HOM05D000133 ORTHO05D000259 2.1e-07 60.8 44 65.9
EL10Ac9g22710 Beta vulgaris HOM05D000133 ORTHO05D000259 2.7e-07 60.5 44 68.2
Ah.01g013770 Amaranthus hybridus HOM05D000133 ORTHO05D000259 3.6e-07 60.1 44 65.9
TAR629G2727 Trochodendron aralioides HOM05D000133 ORTHO05D000259 2.3e-06 57.4 44 61.4
Aa31LG2G4960 Aethionema arabicum HOM05D000133 ORTHO05D000259 5.1e-06 56.2 45 64.4
Aa31LG2G4990 Aethionema arabicum HOM05D000133 ORTHO05D000259 5.1e-06 56.2 45 64.4
Aa31sc2856G10 Aethionema arabicum HOM05D000133 ORTHO05D000259 5.1e-06 56.2 45 64.4
Gohir.D07G197100 Gossypium hirsutum HOM05D000133 ORTHO05D000259 5.1e-06 56.2 45 66.7
Gorai.001G220900 Gossypium raimondii HOM05D000133 ORTHO05D000259 5.1e-06 56.2 45 66.7
Gohir.A07G190800 Gossypium hirsutum HOM05D000133 ORTHO05D000259 6.7e-06 55.8 45 64.4


User provided reference genes

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