Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.2e-219 766.1 371 100.0
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.6e-163 578.2 386 74.4
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.1e-151 540.4 371 71.4
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 8.4e-149 530.8 371 68.5
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.3e-145 518.5 369 68.8
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 1.7e-141 506.5 373 66.0
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 2.2e-141 506.1 371 66.8
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 2.1e-139 499.6 389 63.8
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 2.3e-138 496.1 374 66.3
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 1.3e-136 490.3 369 65.6
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.2e-136 489.6 376 64.9
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 2.2e-136 489.6 351 68.9
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.1e-135 487.3 361 65.4
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 1.4e-135 486.9 364 67.6
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 5.3e-135 485.0 370 64.1
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.5e-134 481.9 368 65.8
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 7.7e-134 481.1 351 66.1
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 1.0e-133 480.7 375 62.7
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 2.2e-133 479.6 333 67.3
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 6.5e-133 478.0 384 61.7
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 6.5e-133 478.0 372 63.7
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.4e-132 476.9 368 62.8
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 2.5e-132 476.1 376 62.2
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 9.4e-132 474.2 384 61.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.2e-131 473.8 330 68.2
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.2e-131 473.8 359 66.0
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-131 473.8 364 65.7
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-131 473.0 379 62.5
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 2.7e-131 472.6 334 66.8
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 3.6e-131 472.2 386 60.1
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.7e-131 471.9 368 64.9
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 4.7e-131 471.9 319 70.5
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 6.1e-131 471.5 365 63.3
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 1.0e-130 470.7 390 61.3
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.4e-130 470.3 322 68.9
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.3e-130 469.5 371 62.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 3.0e-130 469.2 333 66.4
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 5.1e-130 468.4 362 65.2
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 6.7e-130 468.0 324 68.5
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 2.0e-129 466.5 364 63.7
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 2.6e-129 466.1 371 65.0
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 2.6e-129 466.1 333 65.8
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 3.3e-129 465.7 371 65.0
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 3.3e-129 465.7 366 60.9
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 5.7e-129 464.9 363 62.5
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.3e-128 463.8 324 68.5
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 4.8e-128 461.8 362 62.7
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 6.3e-128 461.5 329 66.0
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 1.1e-127 460.7 359 62.4
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 7.0e-127 458.0 374 62.3
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 2.0e-126 456.4 350 66.6
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.0e-126 456.4 324 67.3
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 7.7e-126 454.5 397 57.4
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 1.3e-125 453.8 355 61.1
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 2.2e-125 453.0 353 62.6
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 2.9e-125 452.6 374 60.2
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 3.8e-125 452.2 354 62.4
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 5.0e-125 451.8 389 57.8
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.1e-124 450.7 317 69.1
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.5e-124 450.3 319 68.3
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 2.5e-124 449.5 401 58.6
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 3.2e-124 449.1 376 60.4
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 3.2e-124 449.1 363 62.0
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.2e-124 448.7 371 60.9
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.2e-124 448.7 371 60.9
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 7.2e-124 448.0 346 64.5
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 1.2e-123 447.2 377 59.9
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.6e-123 446.8 357 63.6
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 3.6e-123 445.7 332 62.0
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 3.0e-122 442.6 358 61.2
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.5e-121 440.3 356 62.9
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.6e-121 439.5 331 63.7
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 5.7e-121 438.3 334 64.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 7.5e-121 438.0 322 64.6
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 7.5e-121 438.0 357 61.9
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 6.3e-120 434.9 355 60.0
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 6.3e-120 434.9 360 62.5
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 1.1e-119 434.1 360 57.8
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 1.8e-119 433.3 334 63.8
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 2.4e-119 433.0 379 59.9
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.7e-118 429.5 397 58.4
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 3.5e-118 429.1 317 64.7
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 5.9e-118 428.3 321 63.2
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 1.0e-117 427.6 352 61.1
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.0e-117 427.6 341 62.2
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 8.5e-117 424.5 344 60.5
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 7.2e-116 421.4 330 64.2
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 9.4e-116 421.0 368 59.5
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 9.8e-113 411.0 294 68.0
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.2e-112 409.8 357 58.0
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 4.8e-112 408.7 278 68.0
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.8e-111 406.8 283 67.8
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 3.5e-110 402.5 359 58.5
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 4.5e-110 402.1 370 56.2
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.2e-109 399.8 370 53.2
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 1.9e-108 396.7 334 60.8
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.9e-108 396.7 326 61.3
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 2.1e-107 393.3 272 67.6
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 9.8e-105 384.4 327 59.9
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.4e-103 380.6 374 54.0
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 4.5e-102 375.6 359 55.7
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 7.3e-100 368.2 328 57.3
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 9.8e-97 357.8 333 56.5
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.3e-96 357.5 375 51.5
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.6e-94 349.0 279 65.2
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 7.8e-94 348.2 305 55.7
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.0e-93 347.8 278 59.4
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 8.0e-91 338.2 306 54.6
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.4e-87 327.4 376 48.4
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 5.0e-85 318.9 294 53.1
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 2.5e-84 316.6 345 49.0
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 1.7e-80 303.9 301 50.5
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 3.7e-80 302.8 273 57.9
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.3e-72 277.7 223 59.2
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 2.4e-66 256.9 211 57.8
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 3.4e-65 253.1 294 46.3
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.3e-64 251.1 288 41.0
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 9.3e-63 245.0 299 41.8
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 3.2e-55 219.9 299 42.8
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 9.9e-49 198.4 129 73.6
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.0e-37 161.8 147 53.1
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 3.9e-37 159.8 90 82.2
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 5.5e-31 139.4 85 75.3
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 9.7e-28 128.6 199 37.2
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.9e-23 114.4 70 70.0
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 6.1e-14 82.8 94 50.0
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.9e-09 66.2 69 49.3
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 3.2e-07 60.5 42 59.5
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.5e-07 59.7 90 34.4


User provided reference genes

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