Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25864 Selenicereus undatus HOM05D004506 ORTHO05D005894 3.4e-89 331.6 166 100.0
EL10Ac2g04175 Beta vulgaris HOM05D004506 ORTHO05D005894 7.8e-46 187.6 116 81.0
EL10Ac7g17596 Beta vulgaris HOM05D004506 ORTHO05D005894 5.1e-45 184.9 116 80.2
AUR62012431 Chenopodium quinoa HOM05D004506 ORTHO05D005894 6.6e-45 184.5 129 71.3
Sc09g0010310 Simmondsia chinensis HOM05D004506 ORTHO05D005894 6.6e-45 184.5 129 70.5
Ah.16g104730 Amaranthus hybridus HOM05D004506 ORTHO05D005894 3.3e-44 182.2 116 78.4
AUR62031554 Chenopodium quinoa HOM05D004506 ORTHO05D005894 5.6e-44 181.4 129 71.3
QL09p019769 Quercus lobata HOM05D004506 ORTHO05D005894 1.5e-41 173.3 128 68.0
TWI77G0110 Tripterygium wilfordii HOM05D004506 ORTHO05D005894 3.4e-41 172.2 129 66.7
Lsat_1_v5_gn_5_9361 Lactuca sativa HOM05D004506 ORTHO05D005894 5.8e-41 171.4 139 61.9
Potri.001G126700 Populus trichocarpa HOM05D004506 ORTHO05D005894 1.3e-40 170.2 152 60.5
Dinv16855 Davidia involucrata HOM05D004506 ORTHO05D005894 2.2e-40 169.5 129 66.7
Manes.06G102500 Manihot esculenta HOM05D004506 ORTHO05D005894 4.9e-40 168.3 129 64.3
Cfa008176 Carpinus fangiana HOM05D004506 ORTHO05D005894 8.4e-40 167.5 129 64.3
Glyma.06G316900 Glycine max HOM05D004506 ORTHO05D005894 8.4e-40 167.5 129 65.1
HanXRQChr15g0485901 Helianthus annuus HOM05D004506 ORTHO05D005894 8.4e-40 167.5 139 60.4
Actinidia13592 Actinidia chinensis HOM05D004506 ORTHO05D005894 1.1e-39 167.2 152 57.2
ECA232G0243 Erigeron canadensis HOM05D004506 ORTHO05D005894 1.1e-39 167.2 139 61.2
MELO3C005823.2 Cucumis melo HOM05D004506 ORTHO05D005894 1.4e-39 166.8 120 70.0
MD15G1302100 Malus domestica HOM05D004506 ORTHO05D005894 1.4e-39 166.8 129 65.1
Ciclev10004861m.g Citrus clementina HOM05D004506 ORTHO05D005894 1.9e-39 166.4 129 63.6
Duzib084G1159 Durio zibethinus HOM05D004506 ORTHO05D005894 1.9e-39 166.4 129 64.3
Rhsim03G0164500 Rhododendron simsii HOM05D004506 ORTHO05D005894 1.9e-39 166.4 152 56.6
ClCG01G001110 Citrullus lanatus HOM05D004506 ORTHO05D005894 2.4e-39 166.0 116 72.4
Atru.chr1.848 Acer truncatum HOM05D004506 ORTHO05D005894 4.2e-39 165.2 129 64.3
FAN10G1665 Fragaria x ananassa HOM05D004506 ORTHO05D005894 4.2e-39 165.2 129 64.3
RcHm_v2.0_Chr1g0348931 Rosa chinensis HOM05D004506 ORTHO05D005894 4.2e-39 165.2 129 64.3
CsaV3_5G001240 Cucumis sativus L. HOM05D004506 ORTHO05D005894 5.4e-39 164.9 120 69.2
FAN03G0108 Fragaria x ananassa HOM05D004506 ORTHO05D005894 7.1e-39 164.5 129 64.3
FAN01G3128 Fragaria x ananassa HOM05D004506 ORTHO05D005894 9.3e-39 164.1 129 64.3
Sed0002724 Sechium edule HOM05D004506 ORTHO05D005894 9.3e-39 164.1 120 68.3
FAN06G3057 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.2e-38 163.7 129 63.6
FAN06G3781 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.2e-38 163.7 129 63.6
Nn6g33875 Nelumbo nucifera HOM05D004506 ORTHO05D005894 1.6e-38 163.3 121 66.9
DCAR_020180 Daucus carota HOM05D004506 ORTHO05D005894 2.1e-38 162.9 117 69.2
Migut.F00501 Erythranthe guttata HOM05D004506 ORTHO05D005894 2.1e-38 162.9 129 62.0
Lj3g0001820 Lotus japonicus HOM05D004506 ORTHO05D005894 2.1e-38 162.9 129 65.1
FAN10G0788 Fragaria x ananassa HOM05D004506 ORTHO05D005894 2.7e-38 162.5 129 63.6
Glyma.04G130900 Glycine max HOM05D004506 ORTHO05D005894 2.7e-38 162.5 129 64.3
Eucgr.K00176 Eucalyptus grandis HOM05D004506 ORTHO05D005894 3.5e-38 162.2 152 55.9
GSVIVG01017497001 Vitis vinifera HOM05D004506 ORTHO05D005894 3.5e-38 162.2 116 69.8
CiPaw.03G093800 Carya illinoinensis HOM05D004506 ORTHO05D005894 4.6e-38 161.8 129 65.1
TPR.G12273 Trifolium pratense HOM05D004506 ORTHO05D005894 6.0e-38 161.4 106 71.7
Solyc06g034150.4 Solanum lycopersicum HOM05D004506 ORTHO05D005894 7.9e-38 161.0 130 63.1
Sopen06g010810 Solanum pennellii HOM05D004506 ORTHO05D005894 7.9e-38 161.0 130 63.1
QL09p019805 Quercus lobata HOM05D004506 ORTHO05D005894 1.0e-37 160.6 115 67.8
CSS0039072 Camellia sinensis var. sinensis HOM05D004506 ORTHO05D005894 1.8e-37 159.8 100 76.0
Medtr3g008020 Medicago truncatula HOM05D004506 ORTHO05D005894 2.3e-37 159.5 119 66.4
Prupe.2G274800 Prunus persica HOM05D004506 ORTHO05D005894 2.3e-37 159.5 109 69.7
Psat5g229120 Pisum sativum HOM05D004506 ORTHO05D005894 3.0e-37 159.1 106 71.7
CAN.G330.6 Capsicum annuum HOM05D004506 ORTHO05D005894 3.9e-37 158.7 133 60.9
Nitab4.5_0001267g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 3.9e-37 158.7 147 55.8
Oeu042536.1 Olea europaea HOM05D004506 ORTHO05D005894 3.9e-37 158.7 138 58.7
Peaxi162Scf00304g01360 Petunia axillaris HOM05D004506 ORTHO05D005894 5.1e-37 158.3 153 54.9
Prupe.5G016200 Prunus persica HOM05D004506 ORTHO05D005894 5.1e-37 158.3 141 57.4
Lj4g0017120 Lotus japonicus HOM05D004506 ORTHO05D005894 6.7e-37 157.9 129 63.6
Peaxi162Scf00271g00832 Petunia axillaris HOM05D004506 ORTHO05D005894 6.7e-37 157.9 147 55.8
Phvul.005G010500 Phaseolus vulgaris HOM05D004506 ORTHO05D005894 6.7e-37 157.9 119 64.7
Thhalv10013434m.g Eutrema salsugineum HOM05D004506 ORTHO05D005894 8.7e-37 157.5 129 62.8
Nitab4.5_0000262g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 8.7e-37 157.5 147 55.1
Nitab4.5_0000448g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 8.7e-37 157.5 147 55.1
PSO017G3180 Papaver somniferum HOM05D004506 ORTHO05D005894 8.7e-37 157.5 126 61.9
PSO170G4268 Papaver somniferum HOM05D004506 ORTHO05D005894 8.7e-37 157.5 126 61.1
Gohir.D03G106400 Gossypium hirsutum HOM05D004506 ORTHO05D005894 1.1e-36 157.1 129 61.2
Lalb_Chr15g0079621 Lupinus albus HOM05D004506 ORTHO05D005894 1.1e-36 157.1 106 71.7
QL09p019790 Quercus lobata HOM05D004506 ORTHO05D005894 1.9e-36 156.4 115 68.7
arahy.Tifrunner.gnm1.ann1.95MHTD Arachis hypogaea HOM05D004506 ORTHO05D005894 3.3e-36 155.6 131 62.6
Gohir.A03G059500 Gossypium hirsutum HOM05D004506 ORTHO05D005894 3.3e-36 155.6 129 60.5
CDE11G0103 Ceratophyllum demersum HOM05D004506 ORTHO05D005894 4.3e-36 155.2 117 65.0
Cc02_g04480 Coffea canephora HOM05D004506 ORTHO05D005894 4.3e-36 155.2 152 53.9
MBI04_g09533_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 5.6e-36 154.8 117 66.7
MBI04_g34093_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 5.6e-36 154.8 104 73.1
CARHR208670 Cardamine hirsuta HOM05D004506 ORTHO05D005894 7.4e-36 154.5 116 64.7
Gorai.003G112900 Gossypium raimondii HOM05D004506 ORTHO05D005894 9.6e-36 154.1 130 61.5
Sp6g38160 Schrenkiella parvula HOM05D004506 ORTHO05D005894 9.6e-36 154.1 129 61.2
Carub.0006s0354 Capsella rubella HOM05D004506 ORTHO05D005894 1.3e-35 153.7 116 65.5
Psat4g224080 Pisum sativum HOM05D004506 ORTHO05D005894 1.3e-35 153.7 106 68.9
Thecc.03G152000 Theobroma cacao HOM05D004506 ORTHO05D005894 1.3e-35 153.7 116 65.5
C09p72170 Brassica napus HOM05D004506 ORTHO05D005894 1.6e-35 153.3 129 60.5
AL6G14250 Arabidopsis lyrata HOM05D004506 ORTHO05D005894 2.1e-35 152.9 116 64.7
SGA_v2.0_scaffold2G01228 Striga asiatica HOM05D004506 ORTHO05D005894 2.8e-35 152.5 120 60.0
AT5G04620 Arabidopsis thaliana HOM05D004506 ORTHO05D005894 3.7e-35 152.1 116 64.7
ATR0057G043 Amborella trichopoda HOM05D004506 ORTHO05D005894 4.8e-35 151.8 114 64.9
A10p31480 Brassica napus HOM05D004506 ORTHO05D005894 8.1e-35 151.0 129 59.7
BolC9t59961H Brassica oleracea HOM05D004506 ORTHO05D005894 8.1e-35 151.0 129 59.7
BraA10t45194Z Brassica rapa HOM05D004506 ORTHO05D005894 8.1e-35 151.0 129 59.7
arahy.Tifrunner.gnm1.ann1.IFX0ZR Arachis hypogaea HOM05D004506 ORTHO05D005894 1.1e-34 150.6 135 59.3
Lj3g0005902 Lotus japonicus HOM05D004506 ORTHO05D005894 1.1e-34 150.6 122 59.8
BcaC06g32172 Brassica carinata HOM05D004506 ORTHO05D005894 2.4e-34 149.4 129 58.9
Aa31LG11G5470 Aethionema arabicum HOM05D004506 ORTHO05D005894 5.3e-34 148.3 116 62.9
COL.COLO4_14084 Corchorus olitorius HOM05D004506 ORTHO05D005894 5.8e-33 144.8 116 59.5
Lj4g0011722 Lotus japonicus HOM05D004506 ORTHO05D005894 5.8e-33 144.8 114 61.4
HPP92_025562 Vanilla planifolia HOM05D004506 ORTHO05D005894 1.3e-32 143.7 129 56.6
unitig_748.g7052 Utricularia gibba HOM05D004506 ORTHO05D005894 1.7e-32 143.3 99 67.7
COL.COLO4_14080 Corchorus olitorius HOM05D004506 ORTHO05D005894 1.4e-31 140.2 130 56.2
Cpa.g.sc13.277 Carica papaya HOM05D004506 ORTHO05D005894 2.5e-31 139.4 152 48.7
Rhsim03G0164600 Rhododendron simsii HOM05D004506 ORTHO05D005894 4.6e-30 135.2 131 53.4
Zm00001eb434390 Zea mays HOM05D004506 ORTHO05D005894 1.3e-27 127.1 96 61.5
COL.COLO4_14083 Corchorus olitorius HOM05D004506 ORTHO05D005894 4.8e-27 125.2 116 54.3
Duzib205G1320 Durio zibethinus HOM05D004506 ORTHO05D005894 3.1e-26 122.5 102 60.8
SEGI_23386 Sequoiadendron giganteum HOM05D004506 ORTHO05D005894 3.1e-26 122.5 137 46.0
Os10g0560900 Oryza sativa ssp. japonica HOM05D004506 ORTHO05D005894 4.0e-26 122.1 96 58.3
Aqoxy7G00808 Aquilegia oxysepala HOM05D004506 ORTHO05D005894 1.2e-25 120.6 96 62.5
Migut.F00496 Erythranthe guttata HOM05D004506 ORTHO05D005894 1.2e-25 120.6 94 61.7
vmacro06819 Vaccinium macrocarpon HOM05D004506 ORTHO05D005894 1.2e-25 120.6 106 58.5
PGSC0003DMG400021582 Solanum tuberosum HOM05D004506 ORTHO05D005894 5.8e-25 118.2 87 66.7
SMO116G0299 Selaginella moellendorffii HOM05D004506 ORTHO05D005894 2.5e-23 112.8 100 56.0
AagrBONN_evm.TU.Sc2ySwM_117.115 Anthoceros agrestis HOM05D004506 ORTHO05D005894 2.1e-22 109.8 106 50.0
COL.COLO4_14082 Corchorus olitorius HOM05D004506 ORTHO05D005894 3.9e-21 105.5 118 47.5
Lj8A45T71 Lonicera japonica HOM05D004506 ORTHO05D005894 3.9e-21 105.5 104 53.8
Mapoly0011s0111 Marchantia polymorpha HOM05D004506 ORTHO05D005894 2.8e-19 99.4 112 44.6
Pp3c12_22290 Physcomitrium patens HOM05D004506 ORTHO05D005894 1.1e-18 97.4 109 47.7
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 3.1e-18 95.9 62 72.6
Psat6g019240 Pisum sativum HOM05D004506 ORTHO05D000469 7.7e-17 91.3 64 67.2
RcHm_v2.0_Chr1g0348991 Rosa chinensis HOM05D004506 ORTHO05D030863 6.1e-14 81.6 64 59.4
Sabra01G0097700 Salix brachista HOM05D004506 ORTHO05D005894 3.9e-13 79.0 65 61.5
MCO13G220 Micromonas commoda HOM05D004506 ORTHO05D005894 5.1e-13 78.6 133 39.1
COL.COLO4_15394 Corchorus olitorius HOM05D004506 ORTHO05D005894 6.7e-13 78.2 66 51.5
Gohir.D09G064600 Gossypium hirsutum HOM05D004506 ORTHO05D005894 2.0e-12 76.6 64 56.2
Cre17.g733702 Chlamydomonas reinhardtii HOM05D004506 ORTHO05D005894 2.5e-12 76.3 104 41.3
Gorai.011G088200 Gossypium raimondii HOM05D004506 ORTHO05D005894 5.7e-12 75.1 65 55.4
PGR042G2434 Punica granatum HOM05D004506 ORTHO05D005894 2.8e-11 72.8 64 57.8
Gorai.009G362800 Gossypium raimondii HOM05D004506 ORTHO05D005894 4.8e-11 72.0 65 53.8
CBR_g51950 Chara braunii HOM05D004506 ORTHO05D005894 6.5e-08 61.6 132 34.1
Nitab4.5_0001358g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 2.5e-07 59.7 76 46.1
Actinidia24984 Actinidia chinensis HOM05D004506 ORTHO05D030863 2.7e-06 56.2 44 56.8


User provided reference genes

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