Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1781.5 857 100.0
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1402.5 860 77.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1317.0 873 72.4
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1298.1 860 71.6
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1273.5 856 70.7
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1262.7 835 72.1
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1244.6 856 68.5
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1239.6 854 68.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1238.8 859 67.6
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1233.8 856 68.6
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1225.7 856 67.4
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1224.2 886 66.7
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1223.0 886 66.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1221.5 855 68.4
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 855 68.1
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1209.5 856 67.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1209.1 855 66.8
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1201.0 858 65.5
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1200.3 857 65.8
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1196.8 856 66.8
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 861 66.2
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 857 67.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1193.7 848 65.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1191.8 855 67.0
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 857 66.7
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 857 66.7
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 813 69.1
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1182.5 856 66.4
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1182.2 858 65.7
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1182.2 844 66.5
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1181.0 851 65.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1180.6 853 65.7
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1180.2 856 66.2
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 854 66.0
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1176.8 853 66.4
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 869 65.5
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1167.5 855 64.2
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1167.1 858 64.3
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1166.0 852 65.8
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 824 67.2
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 861 64.9
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 860 64.2
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 856 64.8
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1161.7 861 64.6
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 855 65.7
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 974 58.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1157.9 856 65.1
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1157.5 860 64.1
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 857 64.6
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 854 63.8
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 859 63.8
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1156.7 852 63.7
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1155.6 858 65.2
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 857 64.4
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 856 65.1
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1153.7 861 63.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1153.3 855 63.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 856 63.3
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1150.6 863 65.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1149.8 852 65.0
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1149.8 855 63.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1147.9 857 63.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 858 63.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 854 63.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 855 64.1
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1142.9 858 64.5
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1137.9 852 64.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1134.4 854 63.1
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1131.3 851 63.8
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1130.9 815 66.0
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1129.8 879 62.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1123.2 854 62.8
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 848 63.1
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1119.8 854 63.0
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 858 63.6
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 854 63.0
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 860 62.7
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 856 63.1
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1108.6 874 62.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 889 61.1
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1104.0 856 61.0
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1102.0 857 60.9
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 810 64.8
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 811 64.7
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1094.3 860 62.3
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1093.6 832 61.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 890 60.6
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1089.3 857 62.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1076.2 851 60.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 8.8e-311 1070.1 797 64.1
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.4e-308 1060.8 777 63.2
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 3.3e-305 1051.6 768 63.2
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 4.3e-305 1051.2 766 62.4
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.2e-304 1049.7 726 67.8
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 2.0e-302 1042.3 753 64.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.8e-299 1030.4 772 62.7
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 7.8e-299 1030.4 851 59.6
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 7.8e-299 1030.4 836 60.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 769 63.5
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 866 59.6
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 4.3e-297 1024.6 885 57.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 1.6e-296 1022.7 774 62.1
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.1e-295 1020.0 771 62.6
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.1e-295 1018.5 854 58.4
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 4.5e-294 1014.6 771 61.7
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 1.3e-293 1013.1 767 64.8
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.9e-293 1011.9 718 65.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 3.2e-292 1008.4 774 61.9
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 3.2e-292 1008.4 773 62.2
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 5.6e-289 997.7 647 73.1
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 2.1e-288 995.7 773 61.3
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 8.1e-288 993.8 804 60.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.9e-285 985.3 776 60.8
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 2.3e-282 975.7 919 53.9
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 3.8e-277 958.4 775 60.0
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 9.3e-276 953.7 727 61.5
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.1e-267 926.0 861 55.4
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.2e-261 906.0 800 56.4
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 4.1e-247 858.6 816 51.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.0e-245 854.0 777 54.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.0e-245 854.0 833 51.0
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 7.2e-236 821.2 855 47.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.3e-234 816.2 795 52.3
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 1.6e-230 803.5 606 63.9
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 5.9e-230 801.6 788 50.0
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.6e-219 765.8 626 59.4
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 2.8e-211 739.6 784 49.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.1e-210 737.6 662 56.6
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.9e-205 719.2 472 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 8.9e-202 708.0 664 51.2
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.6e-198 695.7 433 72.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 8.7e-189 664.8 441 67.8
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.2e-177 627.9 590 54.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.7e-176 624.0 426 67.4
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.5e-172 610.9 657 49.8
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.5e-169 600.9 864 38.8
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.9e-167 594.0 476 60.3
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.2e-167 592.8 501 56.9
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 8.8e-149 531.9 571 50.3
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.7e-132 475.3 780 37.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.8e-125 454.5 374 57.8
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.3e-125 454.1 320 62.8
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.7e-123 448.0 272 75.4
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.4e-117 428.3 446 50.4
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.2e-117 426.4 333 61.0
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 8.9e-109 399.1 420 49.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.0e-104 385.6 398 50.3
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 3.3e-103 380.6 400 52.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 9.8e-92 342.4 244 65.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.7e-83 315.1 584 33.7
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 9.6e-79 299.3 827 28.9
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-72 278.5 202 64.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 2.0e-60 238.4 207 58.0
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-55 222.2 167 59.9
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.7e-54 217.6 139 69.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 1.1e-50 206.1 100 87.0
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 8.4e-43 179.9 100 77.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.3e-40 172.6 192 47.9
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.6e-33 149.1 128 53.9
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 2.0e-31 142.1 193 39.4
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 3.6e-25 121.3 92 60.9
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 7.4e-23 113.6 69 76.8
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.4e-21 109.4 137 47.4
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 5.5e-18 97.4 93 55.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 2.7e-17 95.1 81 56.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.0e-16 93.2 84 57.1
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 3.0e-16 91.7 71 62.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 8.8e-16 90.1 61 65.6
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.1e-13 81.6 46 73.9
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.2e-12 79.7 40 80.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.6e-12 79.3 98 42.9
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.6e-12 79.3 49 75.5
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.0e-12 79.0 97 43.3
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.0e-12 79.0 75 53.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 9.4e-10 70.1 59 57.6
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 3.0e-08 65.1 64 56.2


User provided reference genes

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