Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25406 Selenicereus undatus HOM05D003110 ORTHO05D381867 7.5e-35 149.8 69 100.0
Hund30349 Selenicereus undatus HOM05D003110 ORTHO05D003585 7.6e-11 70.1 151 33.8
Hund30350 Selenicereus undatus HOM05D003110 ORTHO05D003585 7.6e-11 70.1 151 33.8
Sc14g0008790 Simmondsia chinensis HOM05D003110 ORTHO05D003585 6.4e-10 67.0 151 32.5
Gohir.A05G354000 Gossypium hirsutum HOM05D003110 ORTHO05D003585 8.4e-10 66.6 151 32.5
Gohir.A07G224600 Gossypium hirsutum HOM05D003110 ORTHO05D003585 8.4e-10 66.6 151 32.5
Gorai.001G267100 Gossypium raimondii HOM05D003110 ORTHO05D003585 1.1e-09 66.2 151 32.5
Thecc.04G021600 Theobroma cacao HOM05D003110 ORTHO05D003585 1.1e-09 66.2 151 31.8
Duzib147G0622 Durio zibethinus HOM05D003110 ORTHO05D003585 1.4e-09 65.9 151 31.8
Gohir.D04G059100 Gossypium hirsutum HOM05D003110 ORTHO05D003585 1.4e-09 65.9 151 32.5
Gorai.012G065800 Gossypium raimondii HOM05D003110 ORTHO05D003585 1.4e-09 65.9 151 32.5
Duzib187G1719 Durio zibethinus HOM05D003110 ORTHO05D003585 3.2e-09 64.7 151 31.8
Gohir.D07G231900 Gossypium hirsutum HOM05D003110 ORTHO05D003585 3.2e-09 64.7 151 31.8
MBI03_g26652_MAGBIO Magnolia biondii HOM05D003110 ORTHO05D003585 4.2e-09 64.3 151 31.1
GSVIVG01000574001 Vitis vinifera HOM05D003110 ORTHO05D003585 4.2e-09 64.3 151 30.5
CDE01G0394 Ceratophyllum demersum HOM05D003110 ORTHO05D003585 1.2e-08 62.8 151 31.1
Oeu059779.1 Olea europaea HOM05D003110 ORTHO05D003585 1.2e-08 62.8 151 30.5
Actinidia37452 Actinidia chinensis HOM05D003110 ORTHO05D003585 1.6e-08 62.4 151 30.5
Nn4g22543 Nelumbo nucifera HOM05D003110 ORTHO05D003585 2.1e-08 62.0 151 29.8
Actinidia01365 Actinidia chinensis HOM05D003110 ORTHO05D003585 2.7e-08 61.6 151 31.1
Nn3g16653 Nelumbo nucifera HOM05D003110 ORTHO05D003585 2.7e-08 61.6 151 28.5
Sed0007881 Sechium edule HOM05D003110 ORTHO05D003585 2.7e-08 61.6 151 30.5
ATR1149G082 Amborella trichopoda HOM05D003110 ORTHO05D003585 3.5e-08 61.2 151 29.8
CSS0043848 Camellia sinensis var. sinensis HOM05D003110 ORTHO05D003585 3.5e-08 61.2 37 70.3
ClCG11G000300 Citrullus lanatus HOM05D003110 ORTHO05D003585 3.5e-08 61.2 151 30.5
MELO3C027069.2 Cucumis melo HOM05D003110 ORTHO05D003585 3.5e-08 61.2 151 30.5
Actinidia15115 Actinidia chinensis HOM05D000077 ORTHO05D003585 4.6e-08 60.8 151 29.8
A02p35480 Brassica napus HOM05D003110 ORTHO05D003585 4.6e-08 60.8 151 29.1
BraA02t08549Z Brassica rapa HOM05D003110 ORTHO05D003585 4.6e-08 60.8 151 29.1
CSS0046689 Camellia sinensis var. sinensis HOM05D003110 ORTHO05D003585 4.6e-08 60.8 37 73.0
ClCG09G009570 Citrullus lanatus HOM05D003110 ORTHO05D003585 4.6e-08 60.8 151 30.5
COL.COLO4_23501 Corchorus olitorius HOM05D003110 ORTHO05D003585 4.6e-08 60.8 151 30.5
THA.LOC104805358 Tarenaya hassleriana HOM05D003110 ORTHO05D003585 4.6e-08 60.8 151 29.1
CSS0014182 Camellia sinensis var. sinensis HOM05D003110 ORTHO05D003585 6.0e-08 60.5 151 29.8
CARHR148800 Cardamine hirsuta HOM05D003110 ORTHO05D003585 6.0e-08 60.5 151 29.1
Ciclev10016241m.g Citrus clementina HOM05D003110 ORTHO05D003585 6.0e-08 60.5 151 29.8
QL02p073801 Quercus lobata HOM05D003110 ORTHO05D003585 6.0e-08 60.5 151 29.8
THA.LOC104823956 Tarenaya hassleriana HOM05D003110 ORTHO05D003585 6.0e-08 60.5 151 29.8
TAR629G3311 Trochodendron aralioides HOM05D003110 ORTHO05D003585 6.0e-08 60.5 151 29.8
EL10As2g23169 Beta vulgaris HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 31.1
BcaC03g17464 Brassica carinata HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
BcaC06g30990 Brassica carinata HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
BcaC06g33819 Brassica carinata HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
A06p41180 Brassica napus HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
C07p36490 Brassica napus HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
BolC7t44168H Brassica oleracea HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
BraA06t27041Z Brassica rapa HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
MBI06_g00929_MAGBIO Magnolia biondii HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 29.8
Sp2g16630 Schrenkiella parvula HOM05D003110 ORTHO05D003585 7.9e-08 60.1 151 28.5
CAN.G43.20 Capsicum annuum HOM05D003110 ORTHO05D003585 1.0e-07 59.7 146 30.8
COL.COLO4_29191 Corchorus olitorius HOM05D003110 ORTHO05D003585 1.0e-07 59.7 152 30.9
AL7G49220 Arabidopsis lyrata HOM05D003110 ORTHO05D003585 1.3e-07 59.3 151 28.5
Thhalv10004761m.g Eutrema salsugineum HOM05D003110 ORTHO05D003585 1.3e-07 59.3 151 27.8
AL5G16840 Arabidopsis lyrata HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 28.5
AT3G27430 Arabidopsis thaliana HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 28.5
C02p54200 Brassica napus HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 27.8
BolC2t11483H Brassica oleracea HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 27.8
Carub.0007s3492 Capsella rubella HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 28.5
CsaV3_5G037190 Cucumis sativus L. HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 29.8
Dinv14746 Davidia involucrata HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 30.5
Eucgr.J02263 Eucalyptus grandis HOM05D003110 ORTHO05D003585 1.8e-07 58.9 151 28.5
PSO754G0006 Papaver somniferum HOM05D003110 ORTHO05D003585 1.8e-07 58.9 37 70.3
Solyc04g024420.3 Solanum lycopersicum HOM05D003110 ORTHO05D003585 1.8e-07 58.9 36 72.2
vmacro16167 Vaccinium macrocarpon HOM05D003110 ORTHO05D003585 1.8e-07 58.9 148 29.7
AT5G40580 Arabidopsis thaliana HOM05D003110 ORTHO05D003585 2.3e-07 58.5 151 27.8
Cc11_g16060 Coffea canephora HOM05D003110 ORTHO05D003585 2.3e-07 58.5 151 29.8
Haze_12282 Corylus avellana HOM05D000077 ORTHO05D002511 2.3e-07 58.5 152 28.9
Manes.15G152900 Manihot esculenta HOM05D003110 ORTHO05D003585 2.3e-07 58.5 151 29.1
PGR142G0956 Punica granatum HOM05D003110 ORTHO05D003585 2.3e-07 58.5 153 30.7
RcHm_v2.0_Chr2g0173491 Rosa chinensis HOM05D003110 ORTHO05D003585 2.3e-07 58.5 151 30.5
Aa31LG2G5190 Aethionema arabicum HOM05D003110 ORTHO05D003585 3.0e-07 58.2 151 27.8
BcaB07g30157 Brassica carinata HOM05D003110 ORTHO05D003585 3.0e-07 58.2 147 29.3
Cfa009247 Carpinus fangiana HOM05D003110 ORTHO05D003585 3.0e-07 58.2 152 28.9
AUR62024227 Chenopodium quinoa HOM05D003110 ORTHO05D003585 3.0e-07 58.2 151 30.5
Thhalv10027794m.g Eutrema salsugineum HOM05D003110 ORTHO05D003585 3.0e-07 58.2 151 28.5
AL398U10010 Arabidopsis lyrata HOM05D003110 ORTHO05D003585 3.9e-07 57.8 151 28.5
Carub.0005s0583 Capsella rubella HOM05D003110 ORTHO05D003585 3.9e-07 57.8 151 27.8
FvH4_6g52030 Fragaria vesca HOM05D003110 ORTHO05D003585 3.9e-07 57.8 151 29.8
FAN09G4347 Fragaria x ananassa HOM05D003110 ORTHO05D003585 3.9e-07 57.8 151 29.8
FAN14G5888 Fragaria x ananassa HOM05D003110 ORTHO05D003585 3.9e-07 57.8 151 29.8
PSO832G1560 Papaver somniferum HOM05D003110 ORTHO05D003585 3.9e-07 57.8 37 67.6
Solyc05g013820.4 Solanum lycopersicum HOM05D003110 ORTHO05D003585 3.9e-07 57.8 146 30.1
Sopen05g008730 Solanum pennellii HOM05D003110 ORTHO05D003585 3.9e-07 57.8 146 30.1
Aa31LG9G1050 Aethionema arabicum HOM05D003110 ORTHO05D003585 5.1e-07 57.4 151 27.2
CSS0011443 Camellia sinensis var. sinensis HOM05D003110 ORTHO05D003585 5.1e-07 57.4 37 67.6
AUR62005515 Chenopodium quinoa HOM05D003110 ORTHO05D003585 5.1e-07 57.4 151 29.8
Haze_14771 Corylus avellana HOM05D003110 ORTHO05D003585 5.1e-07 57.4 152 30.3
Sabra17G0063600 Salix brachista HOM05D003110 ORTHO05D003585 5.1e-07 57.4 151 29.8
Manes.17G110000 Manihot esculenta HOM05D003110 ORTHO05D003585 6.7e-07 57.0 151 28.5
Medtr7g037830 Medicago truncatula HOM05D003110 ORTHO05D003585 6.7e-07 57.0 151 29.8
Potri.017G071100 Populus trichocarpa HOM05D003110 ORTHO05D003585 6.7e-07 57.0 151 29.1
Sopen04g010180 Solanum pennellii HOM05D003110 ORTHO05D003585 6.7e-07 57.0 36 69.4
Cfa007326 Carpinus fangiana HOM05D003110 ORTHO05D003585 8.7e-07 56.6 152 30.3
Eucgr.I01719 Eucalyptus grandis HOM05D003110 ORTHO05D003585 8.7e-07 56.6 151 27.8
Sp7g01280 Schrenkiella parvula HOM05D003110 ORTHO05D003585 8.7e-07 56.6 151 27.2
SGA_v2.0_scaffold100G29582 Striga asiatica HOM05D003110 ORTHO05D003585 8.7e-07 56.6 151 29.8
AL2G24690 Arabidopsis lyrata HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 27.8
AL2G24720 Arabidopsis lyrata HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 27.8
CARHR261400 Cardamine hirsuta HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 27.2
CiPaw.04G030400 Carya illinoinensis HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 27.8
DCAR_024420 Daucus carota HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 28.5
Oeu038648.2 Olea europaea HOM05D003110 ORTHO05D003585 1.1e-06 56.2 57 47.4
Prupe.3G295500 Prunus persica HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 29.1
Sed0012147 Sechium edule HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 28.5
TPR.G1129 Trifolium pratense HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 29.1
HPP92_018226 Vanilla planifolia HOM05D003110 ORTHO05D003585 1.1e-06 56.2 151 28.5
Migut.K00628 Erythranthe guttata HOM05D003110 ORTHO05D003585 1.5e-06 55.8 151 29.8
PSO063G6490 Papaver somniferum HOM05D003110 ORTHO05D003585 1.5e-06 55.8 144 31.2
RcHm_v2.0_Chr3g0468681 Rosa chinensis HOM05D003110 ORTHO05D003585 1.5e-06 55.8 151 29.1
Ah.02g130310 Amaranthus hybridus HOM05D003110 ORTHO05D003585 1.9e-06 55.5 152 30.3
MSTRG.551 Avicennia marina HOM05D003110 ORTHO05D003585 1.9e-06 55.5 144 29.2
CiPaw.05G178600 Carya illinoinensis HOM05D003110 ORTHO05D003585 1.9e-06 55.5 151 28.5
Dinv11041 Davidia involucrata HOM05D000077 ORTHO05D003585 1.9e-06 55.5 151 29.8
Medtr7g032930 Medicago truncatula HOM05D003110 ORTHO05D003585 1.9e-06 55.5 151 28.5
PGR044G1483 Punica granatum HOM05D003110 ORTHO05D003585 1.9e-06 55.5 39 66.7
THA.LOC104825313 Tarenaya hassleriana HOM05D003110 ORTHO05D003585 1.9e-06 55.5 37 62.2
RcHm_v2.0_Chr2g0173541 Rosa chinensis HOM05D003110 ORTHO05D003585 2.5e-06 55.1 151 29.1
Ca_14813_v3 Cicer arietinum L. HOM05D003110 ORTHO05D003585 3.3e-06 54.7 151 28.5
MD17G1021000 Malus domestica HOM05D003110 ORTHO05D003585 3.3e-06 54.7 151 28.5
Nitab4.5_0009909g0010 Nicotiana tabacum HOM05D003110 ORTHO05D003585 3.3e-06 54.7 35 65.7
Ah.03g133470 Amaranthus hybridus HOM05D003110 ORTHO05D003585 4.3e-06 54.3 152 29.6
arahy.Tifrunner.gnm1.ann1.E04WLM Arachis hypogaea HOM05D003110 ORTHO05D003585 4.3e-06 54.3 151 27.8
CSS0035746 Camellia sinensis var. sinensis HOM05D003110 ORTHO05D003585 4.3e-06 54.3 37 62.2
CAN.G258.1 Capsicum annuum HOM05D003110 ORTHO05D003585 4.3e-06 54.3 146 28.8
CsaV3_7G025230 Cucumis sativus L. HOM05D003110 ORTHO05D003585 4.3e-06 54.3 151 28.5
Peaxi162Scf00128g00530 Petunia axillaris HOM05D003110 ORTHO05D003585 4.3e-06 54.3 37 62.2
Sabra04G0044100 Salix brachista HOM05D003110 ORTHO05D003585 4.3e-06 54.3 148 28.4
DCAR_026496 Daucus carota HOM05D003110 ORTHO05D003585 5.6e-06 53.9 145 29.0
Lj1C1124G2 Lonicera japonica HOM05D003110 ORTHO05D003585 5.6e-06 53.9 151 27.8
Peaxi162Scf00128g00538 Petunia axillaris HOM05D003110 ORTHO05D003585 5.6e-06 53.9 37 59.5
Psat3g160960 Pisum sativum HOM05D003110 ORTHO05D003585 5.6e-06 53.9 151 28.5
Psat3g171680 Pisum sativum HOM05D003110 ORTHO05D003585 5.6e-06 53.9 151 28.5
vmacro04664 Vaccinium macrocarpon HOM05D003110 ORTHO05D003585 5.6e-06 53.9 37 62.2
Aqoxy5G03672 Aquilegia oxysepala HOM05D003110 ORTHO05D003585 7.4e-06 53.5 152 28.3
MSTRG.7950 Avicennia marina HOM05D003110 ORTHO05D003585 7.4e-06 53.5 144 29.9
CANSAT64G1844 Cannabis sativa HOM05D003110 ORTHO05D003585 7.4e-06 53.5 148 27.7
Mapoly0005s0254 Marchantia polymorpha HOM05D003110 ORTHO05D003585 7.4e-06 53.5 151 28.5
Potri.004G066000 Populus trichocarpa HOM05D003110 ORTHO05D003585 9.6e-06 53.1 148 28.4


User provided reference genes

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