Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 0.0e+00 1679.8 903 100.0
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 0.0e+00 1087.4 922 67.9
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 1.8e-306 1055.8 821 71.6
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 3.1e-306 1055.0 899 66.2
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.8e-299 1031.2 922 65.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 2.4e-290 1002.3 905 61.7
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 9.2e-290 1000.3 912 65.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 8.3e-283 977.2 915 61.4
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 1.4e-282 976.5 932 61.2
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.3e-277 959.1 945 58.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.1e-271 940.3 922 59.4
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.1e-270 936.0 908 58.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.1e-266 923.7 916 59.0
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.2e-266 920.6 920 60.2
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.5e-265 918.7 897 58.5
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.0e-264 917.1 904 58.2
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.9e-263 912.9 915 58.7
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 7.3e-263 911.0 917 58.7
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 9.5e-263 910.6 907 58.0
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 4.0e-261 905.2 928 59.3
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 4.4e-260 901.7 903 57.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 3.2e-258 895.6 919 58.3
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 3.5e-257 892.1 909 58.1
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 4.6e-257 891.7 907 56.7
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 3.6e-254 882.1 926 55.6
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.4e-253 880.2 911 57.2
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 2.6e-252 875.9 910 57.0
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 7.6e-252 874.4 924 56.1
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.4e-250 869.4 913 56.0
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 7.1e-250 867.8 882 58.4
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.7e-249 865.9 868 59.2
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.0e-248 864.0 868 57.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.3e-248 863.6 905 55.4
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 6.6e-248 861.3 929 56.8
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.6e-246 855.5 913 55.6
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.5e-244 850.1 903 56.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 5.8e-244 848.2 901 55.9
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.7e-243 846.7 899 56.0
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 2.2e-243 846.3 900 56.2
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 5.4e-242 841.6 908 55.3
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.1e-242 841.3 916 55.9
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.2e-241 840.5 923 55.7
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 2.1e-241 839.7 896 56.4
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 6.0e-241 838.2 861 57.1
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 3.9e-240 835.5 859 58.1
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.7e-240 834.7 923 55.0
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 8.7e-240 834.3 816 57.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.1e-239 833.9 918 56.5
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 2.5e-239 832.8 918 55.4
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 3.3e-239 832.4 914 55.7
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.3e-239 832.0 923 55.1
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.7e-238 828.9 918 55.6
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 6.2e-238 828.2 912 56.1
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 4.5e-236 822.0 918 55.2
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 7.6e-236 821.2 910 54.3
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 6.4e-235 818.1 892 55.7
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 6.4e-235 818.1 913 56.3
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 4.2e-234 815.5 937 52.6
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 5.5e-234 815.1 866 56.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.8e-232 810.1 918 55.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 2.3e-232 809.7 896 54.5
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.1e-231 807.4 924 54.8
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.9e-231 806.6 902 55.3
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 3.3e-231 805.8 902 55.0
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 8.2e-230 801.2 902 55.0
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 1.1e-229 800.8 906 54.7
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.4e-229 799.7 914 54.4
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 3.4e-228 795.8 862 55.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 4.5e-228 795.4 902 54.9
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 4.2e-226 788.9 931 53.7
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 3.5e-225 785.8 908 52.8
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.0e-224 782.7 902 54.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 3.9e-224 782.3 904 53.7
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 8.7e-224 781.2 910 52.9
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 9.7e-223 777.7 869 53.6
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 3.7e-222 775.8 865 55.6
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 3.1e-221 772.7 910 53.3
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.4e-220 769.2 798 57.1
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.5e-220 768.8 908 51.3
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 5.9e-220 768.5 909 51.9
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.8e-216 756.9 736 59.5
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 2.2e-214 750.0 883 51.8
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.4e-213 747.3 871 52.0
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.4e-213 746.5 884 51.2
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 6.5e-211 738.4 885 51.4
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 8.5e-211 738.0 897 51.2
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.5e-207 727.2 885 50.3
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 4.4e-207 725.7 903 49.8
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 5.7e-207 725.3 865 51.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.7e-206 722.6 880 49.7
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 9.1e-205 718.0 906 49.4
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.5e-204 716.1 883 49.9
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 1.6e-201 707.2 859 49.2
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.6e-201 707.2 908 49.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.8e-200 703.7 886 48.9
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 3.9e-200 702.6 816 51.5
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-198 697.2 878 47.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.7e-198 696.0 884 48.3
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-194 682.6 890 47.8
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-193 681.0 903 47.4
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 4.4e-191 672.5 881 47.4
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.8e-190 669.1 888 47.6
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 2.4e-189 666.8 885 48.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 4.1e-189 666.0 760 54.2
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 4.2e-186 656.0 609 59.4
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 5.7e-183 645.6 892 46.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.4e-181 641.0 871 46.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.0e-180 637.1 902 45.8
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.1e-178 631.3 872 45.4
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.2e-177 627.9 832 48.3
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 8.3e-174 615.1 567 61.7
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.0e-171 608.2 887 44.8
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 6.1e-169 599.0 667 56.5
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.5e-162 577.0 653 55.7
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-162 576.6 882 44.1
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 2.3e-160 570.5 886 44.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-159 567.8 888 43.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-155 554.7 1062 39.5
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 3.1e-128 463.8 406 66.0
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 6.9e-128 462.6 845 39.9
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.6e-121 441.4 907 38.1
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.6e-121 441.4 450 56.9
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.2e-119 435.3 1047 33.7
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.9e-115 420.2 785 40.3
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.7e-110 404.8 458 54.4
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.2e-110 404.4 1009 34.9
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.1e-104 384.0 958 36.3
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 2.1e-100 371.3 348 60.3
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.8e-96 358.2 348 57.8
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.2e-93 347.4 285 66.3
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.6e-92 345.1 248 73.8
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 3.7e-89 334.0 897 32.1
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 3.7e-89 334.0 897 32.1
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 8.2e-89 332.8 862 33.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 5.3e-88 330.1 984 31.6
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 6.1e-68 263.5 218 62.4
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.2e-66 259.2 828 31.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-64 252.7 325 48.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 2.0e-63 248.4 198 62.6
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 5.6e-61 240.4 883 28.5
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.6e-60 238.8 404 42.1
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-59 235.3 404 41.8
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.8e-56 225.3 412 41.5
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 4.1e-56 224.2 409 40.6
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 7.8e-55 219.9 363 42.4
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 7.8e-55 219.9 454 36.6
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-51 209.5 405 42.0
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-45 189.1 363 39.9
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 2.5e-45 188.3 134 67.9
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 5.6e-45 187.2 310 43.9
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.1e-43 181.4 345 41.4
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 9.2e-40 169.9 383 36.3
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.2e-39 169.5 174 60.9
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-38 166.0 491 30.8
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 1.1e-37 162.9 169 55.0
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.3e-37 161.4 672 26.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-34 152.9 218 42.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 2.6e-34 151.8 130 53.8
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.4e-34 151.0 986 24.9
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 9.9e-34 149.8 207 47.8
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.2e-33 148.7 221 42.5
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 2.4e-32 145.2 311 37.0
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 4.1e-32 144.4 310 36.5
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 4.6e-31 141.0 164 53.0
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.7e-25 122.5 126 55.6
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-24 119.4 304 34.2
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 7.1e-24 117.1 304 33.9
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.7e-22 112.5 121 62.8
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.9e-22 111.3 834 24.3
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.1e-12 79.0 237 28.7
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 3.6e-12 78.2 62 62.9
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 3.1e-11 75.1 59 61.0
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 6.9e-11 73.9 200 36.5
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.7e-09 69.3 94 40.4
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 2.7e-07 62.0 287 28.2
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 6.7e-06 57.4 50 56.0
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 8.7e-06 57.0 122 41.0


User provided reference genes

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