Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 7.4e-83 310.5 152 100.0
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.5e-80 302.8 152 96.7
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 2.6e-80 302.0 152 97.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 5.8e-80 300.8 152 96.7
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 5.8e-80 300.8 152 96.7
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.6e-80 300.4 152 96.7
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 7.6e-80 300.4 152 96.7
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 7.6e-80 300.4 152 96.7
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 9.9e-80 300.1 152 96.1
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.3e-79 299.7 152 96.1
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 1.7e-79 299.3 152 97.4
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.7e-79 299.3 152 97.4
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.7e-79 299.3 152 97.4
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 2.2e-79 298.9 151 95.4
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 2.2e-79 298.9 152 96.1
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.9e-79 298.5 152 95.4
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 3.8e-79 298.1 149 97.3
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.9e-79 297.7 152 95.4
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.9e-79 297.7 152 94.7
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 2.4e-78 295.4 152 94.1
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 3.2e-78 295.0 154 94.2
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 94.7
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 94.7
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.2e-78 295.0 152 96.1
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 95.4
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 95.4
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 4.2e-78 294.7 152 95.4
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 94.1
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.5e-78 294.3 152 94.1
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 94.1
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 94.1
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 94.7
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 7.1e-78 293.9 152 94.7
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 7.1e-78 293.9 151 95.4
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 7.1e-78 293.9 151 95.4
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 9.3e-78 293.5 153 94.8
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 9.3e-78 293.5 152 94.1
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.2e-77 293.1 154 92.9
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 94.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.2e-77 293.1 152 94.1
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.6e-77 292.7 152 94.1
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.1e-77 292.4 149 94.0
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.1e-77 292.4 152 93.4
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.1e-77 292.4 154 93.5
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 93.4
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 93.4
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 92.8
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 2.7e-77 292.0 152 93.4
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 93.4
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 92.8
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 94.1
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.5e-77 291.6 151 94.0
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 3.5e-77 291.6 152 93.4
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.6e-77 291.2 148 95.9
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 92.1
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.0e-77 290.8 152 92.8
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 7.9e-77 290.4 150 94.0
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.3e-76 289.7 151 92.7
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.3e-76 289.7 145 95.9
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.3e-76 289.7 148 95.3
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 148 95.3
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 1.8e-76 289.3 148 95.3
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.8e-76 289.3 152 91.4
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.3e-76 288.9 152 94.1
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 3.0e-76 288.5 150 92.7
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 3.9e-76 288.1 151 92.7
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 5.1e-76 287.7 147 94.6
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 5.1e-76 287.7 152 92.8
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 6.7e-76 287.3 150 92.0
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 6.7e-76 287.3 145 94.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 6.7e-76 287.3 145 94.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 92.6
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.5e-75 286.2 148 92.6
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 2.5e-75 285.4 148 92.6
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.5e-75 285.4 144 94.4
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 92.1
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 3.3e-75 285.0 149 92.6
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 3.3e-75 285.0 152 92.1
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 4.3e-75 284.6 148 92.6
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 4.3e-75 284.6 151 90.7
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 4.3e-75 284.6 151 90.7
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 93.2
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 4.3e-75 284.6 147 93.2
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 5.6e-75 284.3 152 91.4
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.4e-75 283.9 152 92.1
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.6e-74 282.7 144 94.4
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 1.6e-74 282.7 150 92.0
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 2.1e-74 282.3 152 90.1
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 92.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 3.7e-74 281.6 148 92.6
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 3.7e-74 281.6 150 92.0
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 92.6
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.8e-74 281.2 148 92.6
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 8.1e-74 280.4 148 91.9
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 8.1e-74 280.4 148 91.9
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 1.1e-73 280.0 151 90.1
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.4e-73 279.6 152 89.5
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 1.8e-73 279.3 152 90.8
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 5.3e-73 277.7 148 89.9
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 1.2e-72 276.6 152 88.8
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.0e-72 275.8 144 92.4
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 3.4e-72 275.0 148 89.2
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.3e-71 273.1 156 87.2
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.3e-71 273.1 144 90.3
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 2.5e-70 268.9 140 92.9
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 7.1e-70 267.3 143 90.9
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.5e-69 265.0 139 91.4
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.9e-68 261.5 132 95.5
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 5.1e-68 261.2 140 90.7
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 8.7e-68 260.4 139 91.4
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.5e-67 258.8 130 95.4
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.6e-66 256.1 146 84.9
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 2.8e-66 255.4 132 93.9
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 6.3e-66 254.2 131 93.9
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 6.3e-66 254.2 131 93.9
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.1e-65 253.4 132 93.9
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.4e-65 253.1 132 90.9
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 1.8e-65 252.7 154 82.5
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 2.4e-65 252.3 130 92.3
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 3.1e-65 251.9 132 93.2
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.1e-65 251.5 131 93.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 5.3e-65 251.1 125 95.2
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.9e-65 250.8 134 89.6
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 9.0e-65 250.4 150 82.7
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 9.0e-65 250.4 132 90.2
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.2e-64 250.0 129 93.0
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.0e-64 249.2 130 91.5
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 2.6e-64 248.8 132 90.2
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 2.6e-64 248.8 134 91.0
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.4e-64 248.4 127 93.7
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 5.9e-64 247.7 132 89.4
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 7.6e-64 247.3 147 83.7
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-63 246.9 132 90.9
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 2.9e-63 245.4 152 82.2
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 7.2e-62 240.7 144 82.6
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 2.3e-60 235.7 146 73.3
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.5e-59 232.3 143 72.7
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 6.3e-58 227.6 151 71.5
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.4e-57 226.5 157 73.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 1.9e-54 216.1 187 62.0
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.0e-52 210.3 145 74.5
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.3e-52 209.1 116 87.1
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 3.7e-50 201.8 126 77.0
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 5.3e-49 198.0 103 94.2
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 2.0e-48 196.1 103 92.2
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 7.7e-48 194.1 103 90.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.5e-46 189.1 114 77.2
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.3e-42 176.8 87 95.4
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 8.2e-42 174.1 115 80.9
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 2.2e-39 166.0 83 96.4
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 8.5e-39 164.1 87 87.4
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.8e-36 156.4 81 93.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 4.4e-35 151.8 147 59.9
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 9.1e-33 144.1 73 97.3
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.2e-32 143.7 74 89.2
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.8e-28 127.5 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.4e-27 125.6 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.7e-26 123.2 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.4e-25 119.4 76 77.6
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 1.6e-16 90.1 45 97.8
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 1.1e-14 84.0 46 89.1
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.8e-12 76.6 74 54.1


User provided reference genes

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