Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 2082.4 1062 100.0
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1533.9 1078 75.9
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 1518.1 1084 74.6
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1512.7 1078 74.9
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1502.3 1104 74.0
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1489.9 1072 74.8
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 1483.0 1098 72.6
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1473.4 1089 73.0
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1459.9 1092 72.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 1455.7 1105 71.3
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 1452.2 1094 72.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1449.1 1094 71.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 1435.2 1097 71.4
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 1428.7 1088 70.7
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1427.2 1082 71.0
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 1421.4 1086 70.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 1421.4 1108 70.5
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 1419.4 1082 70.5
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 1419.1 1102 70.7
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 1416.4 1081 70.3
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1414.8 1102 70.8
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 1413.7 1095 71.0
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1412.9 1098 69.9
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1412.9 1112 68.9
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1411.7 1088 69.8
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 1410.6 1098 69.9
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 1409.0 1162 68.0
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 1404.4 1076 70.1
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 1403.7 1097 69.0
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 1402.1 1111 69.0
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 1400.6 1082 69.8
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 1399.4 1102 69.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 1398.3 1088 70.1
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 1398.3 1056 70.1
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 1397.5 1102 69.6
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 1396.7 1091 69.8
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 1394.8 1072 70.6
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 1394.8 1052 71.5
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 1394.8 1041 72.0
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 1393.3 1077 69.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1385.5 1159 66.4
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1379.8 1079 69.2
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1378.6 1080 68.6
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 1377.1 1099 68.6
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 1375.9 1085 69.5
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 1374.8 1087 68.5
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 1374.0 1082 69.4
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 1374.0 1082 69.2
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1372.8 978 75.2
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 1372.5 1081 68.9
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 1369.4 1081 68.9
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 1367.1 1083 69.2
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1362.8 1153 66.6
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1362.1 1083 67.6
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 1360.5 1056 69.8
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1358.2 1071 67.8
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 1355.1 1074 69.5
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1354.0 1067 67.9
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1354.0 1077 67.0
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1351.3 1082 67.4
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 1347.8 1120 66.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 1347.8 1093 67.1
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1346.6 1074 68.2
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1343.6 1100 66.5
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 1338.9 1100 66.4
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1338.6 1075 66.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1338.2 1085 66.9
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1337.8 1070 68.1
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1337.0 1088 67.0
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 1335.9 1256 61.1
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 1331.6 1105 66.7
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1331.2 984 72.6
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 1323.9 1083 67.7
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1322.0 1084 66.2
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1322.0 1084 66.2
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1320.4 1085 66.1
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1314.3 1085 65.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1311.2 1115 64.9
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 1295.0 1084 67.3
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1295.0 1189 62.1
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1283.5 1113 64.1
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1282.7 1111 64.3
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1280.0 1115 63.9
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1275.8 1113 63.9
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1273.8 1182 60.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 1271.9 1287 58.7
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1270.8 1041 66.2
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1256.9 1400 53.5
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1254.2 1115 63.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1239.9 1077 63.7
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1206.0 1009 64.8
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1180.6 1072 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1178.3 1062 60.5
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1172.1 1037 61.5
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1126.3 1064 59.7
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 4.4e-307 1058.1 960 62.3
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.7e-303 1046.2 941 62.2
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 8.0e-301 1037.3 1068 56.6
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.0e-277 957.6 739 70.5
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.9e-271 939.1 761 68.2
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 7.3e-262 907.9 890 53.5
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 3.6e-261 905.6 663 72.9
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 3.1e-260 902.5 695 71.7
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 3.1e-244 849.4 694 67.6
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 9.9e-243 844.3 684 68.0
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.5e-217 760.0 569 71.2
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.9e-202 709.9 611 64.0
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.3e-197 694.5 449 79.5
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 1.9e-177 627.5 527 66.6
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.7e-173 614.4 501 64.7
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 4.4e-158 563.1 957 38.9
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 4.4e-150 536.6 401 72.3
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.9e-140 504.6 445 63.8
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.1e-108 399.1 892 33.2
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.4e-100 372.1 349 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 5.5e-92 343.6 214 76.6
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.3e-90 338.2 294 63.3
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 9.0e-87 326.2 238 71.8
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.8e-82 312.0 261 65.9
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.0e-69 269.6 661 29.7
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 3.3e-65 254.6 591 29.8
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.6e-62 245.7 224 62.1
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 2.6e-57 228.4 243 53.9
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.1e-51 208.8 231 51.9
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 9.5e-44 183.3 290 42.1
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.5e-41 176.0 220 49.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 8.6e-37 160.2 89 82.0
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 6.2e-35 154.1 191 50.3
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 2.5e-28 132.1 110 67.3
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 2.2e-24 119.0 73 82.2
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.2e-24 119.0 75 80.0
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.7e-24 118.2 81 74.1
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.4e-24 117.5 72 79.2
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-23 115.5 72 75.0
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.4e-23 114.4 71 78.9
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 7.8e-22 110.5 69 79.7
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.5e-17 96.3 66 68.2
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 2.6e-17 95.5 73 69.9
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.3e-16 93.2 51 88.2
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.3e-16 93.2 51 88.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 6.4e-16 90.9 51 86.3
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.7e-13 82.8 57 66.7
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 1.5e-12 79.7 36 94.4
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 5.6e-12 77.8 41 85.4
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 9.6e-12 77.0 50 84.0
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 9.6e-12 77.0 66 62.1
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 2.1e-11 75.9 43 86.0
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 2.4e-10 72.4 55 69.1
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.0e-09 69.3 42 76.2
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 9.9e-09 67.0 96 45.8
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.3e-08 66.6 65 50.8
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 6.4e-08 64.3 75 49.3
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.9e-07 62.8 94 43.6


User provided reference genes

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