Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24432 Selenicereus undatus HOM05D000324 ORTHO05D004875 4.4e-73 277.7 127 100.0
Hund24436 Selenicereus undatus HOM05D000324 ORTHO05D004875 4.7e-51 204.5 127 74.8
AUR62018517 Chenopodium quinoa HOM05D000324 ORTHO05D004875 9.6e-36 153.7 124 59.7
AUR62020902 Chenopodium quinoa HOM05D000324 ORTHO05D004875 2.8e-35 152.1 124 58.9
EL10Ac3g07424 Beta vulgaris HOM05D000324 ORTHO05D004875 4.2e-31 138.3 130 53.8
Ah.04g149530 Amaranthus hybridus HOM05D000020 ORTHO05D004875 6.2e-27 124.4 121 51.2
Hund19019 Selenicereus undatus HOM05D000324 ORTHO05D004875 1.9e-23 112.8 108 52.8
Sc13g0000480 Simmondsia chinensis HOM05D000324 ORTHO05D004875 7.1e-23 110.9 113 50.4
Dinv18404 Davidia involucrata HOM05D000324 ORTHO05D004875 1.3e-21 106.7 124 44.4
Nn1g08146 Nelumbo nucifera HOM05D000324 ORTHO05D004875 1.5e-20 103.2 126 42.1
TAR362G1108 Trochodendron aralioides HOM05D000324 ORTHO05D004875 5.7e-20 101.3 127 48.0
TWI09G0239 Tripterygium wilfordii HOM05D000324 ORTHO05D004875 2.2e-19 99.4 130 45.4
Potri.001G321800 Populus trichocarpa HOM05D000324 ORTHO05D004875 1.8e-18 96.3 110 48.2
Lj3C353G5 Lonicera japonica HOM05D000324 ORTHO05D004875 5.3e-18 94.7 127 41.7
arahy.Tifrunner.gnm1.ann1.8EJC90 Arachis hypogaea HOM05D000324 ORTHO05D004875 1.2e-17 93.6 107 47.7
Hma1.2p1_0806F.1_g221370 Hydrangea macrophylla HOM05D000324 ORTHO05D004875 1.5e-17 93.2 129 40.3
Gohir.A10G128800 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.7e-16 89.7 115 46.1
CSS0006110 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D004875 2.9e-16 89.0 122 41.0
Peaxi162Scf00286g01036 Petunia axillaris HOM05D000324 ORTHO05D004875 5.0e-16 88.2 66 57.6
Prupe.1G167500 Prunus persica HOM05D000324 ORTHO05D004875 5.0e-16 88.2 132 43.2
Lalb_Chr11g0075861 Lupinus albus HOM05D000324 ORTHO05D004875 8.5e-16 87.4 72 52.8
Carub.0003s2409 Capsella rubella HOM05D000324 ORTHO05D004875 1.1e-15 87.0 124 40.3
Gorai.011G152500 Gossypium raimondii HOM05D000324 ORTHO05D004875 1.1e-15 87.0 115 42.6
Actinidia35826 Actinidia chinensis HOM05D000324 ORTHO05D004875 1.4e-15 86.7 134 39.6
Gohir.D10G137300 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.9e-15 86.3 115 42.6
Potri.017G060100 Populus trichocarpa HOM05D000324 ORTHO05D004875 1.9e-15 86.3 70 57.1
Atru.chr4.1549 Acer truncatum HOM05D000324 ORTHO05D004875 2.5e-15 85.9 84 47.6
arahy.Tifrunner.gnm1.ann1.II2GNC Arachis hypogaea HOM05D000324 ORTHO05D004875 2.5e-15 85.9 77 51.9
Phvul.001G265700 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.5e-15 85.9 72 54.2
VMungo1383G3515 Vigna mungo HOM05D000324 ORTHO05D004875 2.5e-15 85.9 72 52.8
Duzib212G0095 Durio zibethinus HOM05D000324 ORTHO05D004875 3.2e-15 85.5 65 58.5
MBI07_g15662_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D004875 3.2e-15 85.5 89 46.1
Sabra17G0054000 Salix brachista HOM05D000324 ORTHO05D004875 3.2e-15 85.5 65 58.5
Ciclev10004427m.g Citrus clementina HOM05D000324 ORTHO05D004875 4.2e-15 85.1 127 37.8
Duzib268G1033 Durio zibethinus HOM05D000324 ORTHO05D004875 4.2e-15 85.1 66 57.6
Cc03_g09380 Coffea canephora HOM05D000324 ORTHO05D004875 5.5e-15 84.7 78 52.6
Glyma.11G254100 Glycine max HOM05D000324 ORTHO05D004875 5.5e-15 84.7 72 52.8
THA.LOC104808688 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 5.5e-15 84.7 64 57.8
COL.COLO4_05432 Corchorus olitorius HOM05D000324 ORTHO05D004875 7.2e-15 84.3 66 57.6
THA.LOC104804788 Tarenaya hassleriana HOM05D000324 ORTHO05D004875 7.2e-15 84.3 127 37.8
COL.COLO4_05433 Corchorus olitorius HOM05D000324 ORTHO05D004875 9.4e-15 84.0 66 56.1
Aa31LG9G3300 Aethionema arabicum HOM05D000324 ORTHO05D004875 1.2e-14 83.6 65 55.4
Gohir.D05G325350 Gossypium hirsutum HOM05D000324 ORTHO05D004875 1.2e-14 83.6 66 57.6
Manes.01G056450 Manihot esculenta HOM05D000324 ORTHO05D004875 1.2e-14 83.6 122 39.3
SGA_v2.0_scaffold19G08786 Striga asiatica HOM05D000324 ORTHO05D004875 1.2e-14 83.6 87 52.9
vmacro00432 Vaccinium macrocarpon HOM05D000324 ORTHO05D004875 1.2e-14 83.6 66 54.5
FAN17G1435 Fragaria x ananassa HOM05D000324 ORTHO05D004875 2.1e-14 82.8 72 54.2
Ca_16424_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 2.7e-14 82.4 71 50.7
FAN07G0429 Fragaria x ananassa HOM05D000324 ORTHO05D004875 3.6e-14 82.0 72 54.2
PSO017G1881 Papaver somniferum HOM05D000324 ORTHO05D004875 3.6e-14 82.0 80 48.8
PGR083G2335 Punica granatum HOM05D000324 ORTHO05D004875 3.6e-14 82.0 114 44.7
Rhsim09G0031500 Rhododendron simsii HOM05D000324 ORTHO05D004875 3.6e-14 82.0 65 55.4
Solyc09g092450.3 Solanum lycopersicum HOM05D000324 ORTHO05D004875 3.6e-14 82.0 77 51.9
Sopen09g035350 Solanum pennellii HOM05D000324 ORTHO05D004875 3.6e-14 82.0 77 51.9
PSO063G7360 Papaver somniferum HOM05D000324 ORTHO05D004875 4.6e-14 81.6 77 46.8
Thecc.04G193200 Theobroma cacao HOM05D000324 ORTHO05D004875 4.6e-14 81.6 66 56.1
SalBow8G4028 Salvia bowleyana HOM05D001020 ORTHO05D004875 6.1e-14 81.3 66 50.0
AL3G38770 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 7.9e-14 80.9 102 42.2
CANSAT78G1272 Cannabis sativa HOM05D000324 ORTHO05D004875 7.9e-14 80.9 62 58.1
Gohir.A05G322700 Gossypium hirsutum HOM05D000324 ORTHO05D004875 7.9e-14 80.9 66 54.5
Actinidia20854 Actinidia chinensis HOM05D000324 ORTHO05D004875 1.0e-13 80.5 125 36.8
FvH4_4g13140 Fragaria vesca HOM05D000324 ORTHO05D004875 1.0e-13 80.5 72 52.8
FAN12G0788 Fragaria x ananassa HOM05D000324 ORTHO05D004875 1.0e-13 80.5 72 52.8
Glyma.05G151200 Glycine max HOM05D000324 ORTHO05D004875 1.0e-13 80.5 72 52.8
Nitab4.5_0000037g0030 Nicotiana tabacum HOM05D000324 ORTHO05D004875 1.0e-13 80.5 66 51.5
Pp3c23_17210 Physcomitrium patens HOM05D000324 ORTHO05D004875 1.0e-13 80.5 87 48.3
AT3G23790 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 1.4e-13 80.1 109 41.3
Lsat_1_v5_gn_1_70301 Lactuca sativa HOM05D000324 ORTHO05D004875 1.4e-13 80.1 128 35.2
Prupe.1G168200 Prunus persica HOM05D000324 ORTHO05D004875 1.8e-13 79.7 72 51.4
DCAR_026665 Daucus carota HOM05D000324 ORTHO05D004875 2.3e-13 79.3 72 51.4
RcHm_v2.0_Chr4g0412911 Rosa chinensis HOM05D000324 ORTHO05D004875 2.3e-13 79.3 72 51.4
Cfa008641 Carpinus fangiana HOM05D000324 ORTHO05D004875 3.0e-13 79.0 82 46.3
Lj4g0014913 Lotus japonicus HOM05D000324 ORTHO05D004875 3.0e-13 79.0 73 54.8
Os03g0845500 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D004875 3.9e-13 78.6 59 59.3
GSVIVG01022434001 Vitis vinifera HOM05D000324 ORTHO05D004875 3.9e-13 78.6 64 56.2
Aa31LG8G10350 Aethionema arabicum HOM05D000324 ORTHO05D004875 6.7e-13 77.8 91 44.0
Lsat_1_v5_gn_1_70360 Lactuca sativa HOM05D000324 ORTHO05D004875 6.7e-13 77.8 76 46.1
MD04G1018900 Malus domestica HOM05D000324 ORTHO05D004875 6.7e-13 77.8 66 50.0
Cpa.g.sc157.33 Carica papaya HOM05D000324 ORTHO05D004875 1.1e-12 77.0 65 53.8
Psat5g099440 Pisum sativum HOM05D000324 ORTHO05D004875 1.1e-12 77.0 99 46.5
ECA248G2180 Erigeron canadensis HOM05D000324 ORTHO05D004875 1.5e-12 76.6 65 55.4
AT4G14070 Arabidopsis thaliana HOM05D000324 ORTHO05D004875 1.9e-12 76.3 77 45.5
Manes.05G201400 Manihot esculenta HOM05D000324 ORTHO05D004875 1.9e-12 76.3 68 48.5
Rhsim09G0061500 Rhododendron simsii HOM05D000324 ORTHO05D004875 1.9e-12 76.3 65 53.8
ClCG06G003220 Citrullus lanatus HOM05D000324 ORTHO05D004875 2.5e-12 75.9 106 40.6
Oeu050714.1 Olea europaea HOM05D000324 ORTHO05D004875 2.5e-12 75.9 60 56.7
RcHm_v2.0_Chr4g0413021 Rosa chinensis HOM05D000324 ORTHO05D004875 3.3e-12 75.5 66 48.5
TPR.G158 Trifolium pratense HOM05D000324 ORTHO05D004875 3.3e-12 75.5 73 47.9
AL7G42350 Arabidopsis lyrata HOM05D000324 ORTHO05D004875 4.3e-12 75.1 77 44.2
CAN.G1155.12 Capsicum annuum HOM05D000324 ORTHO05D004875 4.3e-12 75.1 77 49.4
CARHR099770 Cardamine hirsuta HOM05D000324 ORTHO05D004875 4.3e-12 75.1 129 37.2
Eucgr.H02649 Eucalyptus grandis HOM05D000324 ORTHO05D004875 5.7e-12 74.7 109 41.3
RcHm_v2.0_Chr4g0413231 Rosa chinensis HOM05D000324 ORTHO05D004875 5.7e-12 74.7 106 42.5
BcaC01g03365 Brassica carinata HOM05D000324 ORTHO05D004875 7.4e-12 74.3 95 41.1
Sp3g21490 Schrenkiella parvula HOM05D000324 ORTHO05D004875 7.4e-12 74.3 94 40.4
BcaB03g14616 Brassica carinata HOM05D000324 ORTHO05D004875 9.7e-12 73.9 128 35.9
MD04G1018700 Malus domestica HOM05D000324 ORTHO05D004875 9.7e-12 73.9 72 51.4
Medtr3g084470 Medicago truncatula HOM05D000324 ORTHO05D004875 9.7e-12 73.9 74 48.6
Sp7g11870 Schrenkiella parvula HOM05D000324 ORTHO05D004875 9.7e-12 73.9 60 50.0
CARHR220060 Cardamine hirsuta HOM05D000324 ORTHO05D004875 2.2e-11 72.8 60 56.7
Phvul.003G051300 Phaseolus vulgaris HOM05D000324 ORTHO05D004875 2.2e-11 72.8 66 45.5
Aqoxy2G03912 Aquilegia oxysepala HOM05D000324 ORTHO05D004875 2.8e-11 72.4 71 46.5
MELO3C021161.2 Cucumis melo HOM05D000324 ORTHO05D004875 2.8e-11 72.4 72 43.1
FvH4_4g13151 Fragaria vesca HOM05D000324 ORTHO05D004875 2.8e-11 72.4 116 37.1
Pp3c8_18330 Physcomitrium patens HOM05D000324 ORTHO05D004875 2.8e-11 72.4 112 42.0
CiPaw.01G115100 Carya illinoinensis HOM05D000324 ORTHO05D004875 3.7e-11 72.0 72 44.4
CsaV3_6G001070 Cucumis sativus L. HOM05D000324 ORTHO05D004875 3.7e-11 72.0 72 45.8
Lalb_Chr13g0294751 Lupinus albus HOM05D000324 ORTHO05D004875 4.8e-11 71.6 91 42.9
Medtr3g084450 Medicago truncatula HOM05D000324 ORTHO05D004875 4.8e-11 71.6 72 48.6
Psat7g076000 Pisum sativum HOM05D000324 ORTHO05D004875 4.8e-11 71.6 63 49.2
Sed0014440 Sechium edule HOM05D000324 ORTHO05D004875 4.8e-11 71.6 128 33.6
TPR.G11871 Trifolium pratense HOM05D000324 ORTHO05D004875 4.8e-11 71.6 62 51.6
ATR0069G039 Amborella trichopoda HOM05D000324 ORTHO05D004875 6.3e-11 71.2 62 53.2
C03p53280 Brassica napus HOM05D000324 ORTHO05D004875 6.3e-11 71.2 95 41.1
BolC3t17589H Brassica oleracea HOM05D000324 ORTHO05D004875 6.3e-11 71.2 95 41.1
Thhalv10024478m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 6.3e-11 71.2 127 34.6
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 8.2e-11 70.9 68 48.5
Lsat_1_v5_gn_1_70400 Lactuca sativa HOM05D000324 ORTHO05D004875 8.2e-11 70.9 76 40.8
HanXRQChr01g0022111 Helianthus annuus HOM05D000324 ORTHO05D004875 1.1e-10 70.5 66 48.5
TPR.G28942 Trifolium pratense HOM05D000324 ORTHO05D004875 1.1e-10 70.5 78 46.2
BcaB02g08635 Brassica carinata HOM05D000324 ORTHO05D004875 1.4e-10 70.1 61 50.8
Thhalv10002419m.g Eutrema salsugineum HOM05D000324 ORTHO05D004875 2.4e-10 69.3 80 45.0
Carub.0007s2836 Capsella rubella HOM05D000324 ORTHO05D004875 4.1e-10 68.6 70 47.1
ECA248G0929 Erigeron canadensis HOM05D000324 ORTHO05D004875 4.1e-10 68.6 65 47.7
QL06p026672 Quercus lobata HOM05D000324 ORTHO05D004875 4.1e-10 68.6 60 48.3
Migut.G00782 Erythranthe guttata HOM05D000324 ORTHO05D004875 9.1e-10 67.4 66 40.9
A03p43350 Brassica napus HOM05D000324 ORTHO05D004875 1.2e-09 67.0 127 33.9
VMungo0251G3101 Vigna mungo HOM05D000324 ORTHO05D004875 1.5e-09 66.6 72 43.1
A04p08090 Brassica napus HOM05D000324 ORTHO05D004875 2.0e-09 66.2 59 47.5
BraA04t16497Z Brassica rapa HOM05D000324 ORTHO05D004875 2.0e-09 66.2 59 47.5
BcaC02g09362 Brassica carinata HOM05D000324 ORTHO05D004875 2.6e-09 65.9 38 68.4
C04p41750 Brassica napus HOM05D000324 ORTHO05D004875 2.6e-09 65.9 38 68.4
BolC4t25753H Brassica oleracea HOM05D000324 ORTHO05D004875 2.6e-09 65.9 38 68.4
Haze_11666 Corylus avellana HOM05D000001 ORTHO05D004875 5.9e-09 64.7 69 47.8
ECA248G0353 Erigeron canadensis HOM05D000324 ORTHO05D004875 5.9e-09 64.7 65 49.2
Medtr8g083170 Medicago truncatula HOM05D000324 ORTHO05D004875 2.9e-08 62.4 65 44.6
Mapoly0169s0028 Marchantia polymorpha HOM05D000324 ORTHO05D004875 5.0e-08 61.6 58 46.6
Pp3c19_18340 Physcomitrium patens HOM05D000324 ORTHO05D004875 8.5e-08 60.8 72 41.7
AagrBONN_evm.TU.Sc2ySwM_344.4832 Anthoceros agrestis HOM05D000324 ORTHO05D004875 1.9e-07 59.7 58 46.6


User provided reference genes

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