Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 0.0e+00 1096.6 546 100.0
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 9.7e-186 654.1 488 68.4
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 1.6e-183 646.7 465 68.6
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.3e-182 643.7 488 67.0
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.3e-169 600.5 478 61.5
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 3.3e-165 585.9 467 65.1
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 9.5e-165 584.3 467 64.9
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 6.1e-164 581.6 467 63.4
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.8e-163 580.1 472 64.2
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.2e-161 573.2 467 62.3
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 4.9e-161 572.0 469 62.0
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 4.9e-161 572.0 460 63.3
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 2.4e-160 569.7 472 60.2
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.2e-160 569.3 463 60.7
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 4.1e-160 568.9 494 60.7
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 4.1e-160 568.9 471 60.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 5.4e-160 568.5 477 61.8
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.0e-159 566.6 472 59.7
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 7.8e-159 564.7 471 61.6
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 1.7e-158 563.5 470 60.2
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 2.5e-157 559.7 459 62.1
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 1.2e-156 557.4 460 63.0
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.8e-156 556.2 495 58.2
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 1.4e-155 553.9 482 58.7
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 2.3e-155 553.1 455 61.5
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 6.8e-155 551.6 467 60.6
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 8.9e-155 551.2 475 58.7
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 1.5e-154 550.4 469 61.2
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.4e-154 548.9 469 60.6
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.3e-153 547.4 460 59.8
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 3.7e-153 545.8 466 58.6
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 4.1e-152 542.3 463 58.5
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.8e-151 538.1 474 59.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 7.8e-151 538.1 461 58.8
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 5.0e-150 535.4 475 56.8
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 6.6e-150 535.0 476 58.4
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 1.5e-149 533.9 473 57.5
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.5e-149 533.9 473 59.4
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 1.9e-149 533.5 483 57.8
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 3.3e-149 532.7 439 61.5
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 5.6e-149 531.9 469 57.1
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 5.6e-149 531.9 469 55.0
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.2e-148 530.8 468 59.0
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.6e-148 530.4 469 56.5
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 1.6e-148 530.4 458 58.3
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 2.1e-148 530.0 475 57.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 4.7e-148 528.9 473 57.1
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.1e-147 527.7 469 56.3
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 2.3e-147 526.6 471 56.1
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 3.1e-147 526.2 473 56.9
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.2e-147 525.4 483 56.9
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.8e-147 525.0 470 56.6
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.5e-146 523.9 469 56.9
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 5.8e-146 521.9 467 58.7
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 7.5e-146 521.5 491 55.2
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 7.5e-146 521.5 474 55.5
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 7.5e-146 521.5 453 58.7
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 2.2e-145 520.0 469 57.8
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 8.3e-145 518.1 478 57.1
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 1.1e-144 517.7 476 58.2
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 9.2e-144 514.6 459 58.2
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 3.5e-143 512.7 460 58.7
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 1.0e-142 511.1 465 58.5
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.1e-142 508.8 440 58.0
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 6.6e-142 508.4 468 56.8
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 8.6e-142 508.1 474 57.8
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.5e-141 507.3 434 59.4
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 3.3e-141 506.1 456 57.5
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 4.3e-141 505.8 475 57.9
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 3.6e-140 502.7 475 57.7
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 2.4e-139 500.0 465 57.4
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 4.0e-139 499.2 426 61.5
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 9.2e-136 488.0 500 51.8
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 6.0e-135 485.3 468 57.7
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.0e-134 484.6 496 54.2
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 2.3e-134 483.4 475 56.4
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.5e-130 470.7 489 52.1
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 4.9e-129 465.7 470 50.9
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 6.4e-129 465.3 460 52.0
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 4.2e-128 462.6 474 53.6
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 2.7e-127 459.9 467 51.2
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.6e-127 459.1 475 54.9
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 9.6e-125 451.4 386 59.1
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 2.0e-122 443.7 547 46.3
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.1e-111 407.1 465 45.4
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.1e-109 401.4 373 55.2
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.3e-108 397.9 337 58.8
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.8e-107 394.0 349 57.6
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 5.3e-107 392.5 404 55.2
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 5.3e-107 392.5 338 58.9
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 2.5e-104 383.6 337 56.4
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 7.1e-104 382.1 389 49.1
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 4.8e-100 369.4 419 45.1
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 6.3e-100 369.0 335 58.2
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 5.9e-98 362.5 458 44.8
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 3.0e-94 350.1 339 52.8
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 3.7e-92 343.2 335 54.6
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 9.1e-91 338.6 408 44.9
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.0e-89 335.1 331 53.2
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 3.6e-87 326.6 336 51.8
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.5e-85 321.2 264 61.7
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 7.7e-82 308.9 406 46.1
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 8.0e-71 272.3 463 38.7
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 6.3e-68 262.7 379 41.7
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.8e-67 261.2 231 59.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 5.5e-64 249.6 212 59.4
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.0e-62 245.4 213 59.6
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 5.2e-62 243.0 218 56.9
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 5.4e-59 233.0 202 57.4
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 1.2e-50 205.3 205 54.6
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.0e-46 192.2 136 70.6
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 3.4e-45 187.2 137 63.5
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.1e-43 182.2 180 52.2
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 6.6e-41 172.9 229 41.9
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 6.0e-34 149.8 137 60.6
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.2e-31 142.1 131 58.8
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 8.9e-30 136.0 96 61.5
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 7.1e-27 126.3 128 54.7
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 5.8e-21 106.7 103 47.6
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 5.4e-19 100.1 150 42.0
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 9.2e-19 99.4 74 66.2
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.3e-17 94.7 58 72.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 2.3e-17 94.7 392 24.5
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 5.6e-16 90.1 442 23.5
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 7.3e-16 89.7 437 24.0
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 1.4e-14 85.5 402 25.9
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 5.3e-06 57.0 46 56.5


User provided reference genes

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