Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.1e-128 463.4 248 100.0
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 9.4e-104 380.6 244 84.0
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.1e-99 367.1 250 80.8
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.1e-99 367.1 248 80.2
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.4e-99 366.7 250 80.8
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.2e-98 363.6 248 80.2
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 3.3e-88 328.9 248 71.8
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 3.2e-83 312.4 250 70.0
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 4.1e-83 312.0 247 68.4
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 7.8e-82 307.8 235 72.8
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.7e-81 306.6 250 68.4
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 3.9e-81 305.4 248 69.4
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.5e-80 303.5 240 70.8
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.6e-80 301.6 248 67.7
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 7.3e-80 301.2 248 67.3
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 9.5e-80 300.8 248 67.7
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.6e-79 298.9 248 66.9
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 4.7e-79 298.5 248 66.9
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 8.0e-79 297.7 255 67.1
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 1.1e-78 297.4 248 67.3
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.8e-78 296.6 249 67.9
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 2.3e-78 296.2 250 67.6
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 3.1e-78 295.8 253 67.2
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 4.0e-78 295.4 254 67.7
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 5.2e-78 295.0 253 67.2
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.2e-77 293.9 250 68.0
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 1.2e-77 293.9 235 68.9
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 2.6e-77 292.7 251 67.3
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.4e-77 292.4 252 66.7
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.4e-77 292.4 249 66.3
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 4.4e-77 292.0 236 67.4
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 7.5e-77 291.2 252 66.3
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 9.8e-77 290.8 238 68.5
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 1.3e-76 290.4 252 67.5
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 2.9e-76 289.3 258 65.9
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 3.7e-76 288.9 241 66.8
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 3.7e-76 288.9 224 68.8
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 3.7e-76 288.9 231 71.9
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 3.7e-76 288.9 225 69.3
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 1.1e-75 287.3 251 66.1
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.1e-75 287.3 251 66.1
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 1.1e-75 287.3 248 64.9
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.1e-75 287.3 252 64.3
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 1.1e-75 287.3 252 66.3
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.4e-75 287.0 253 65.6
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.4e-75 287.0 253 66.0
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.4e-75 286.2 243 65.0
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.4e-75 286.2 243 65.4
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.4e-75 286.2 243 65.8
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 4.1e-75 285.4 233 67.0
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 7.0e-75 284.6 243 66.3
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 9.2e-75 284.3 252 65.1
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 1.2e-74 283.9 231 68.4
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.1e-74 283.1 228 68.0
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 3.5e-74 282.3 248 66.5
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 3.5e-74 282.3 251 63.3
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.0e-73 280.8 253 64.8
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.0e-73 280.8 243 64.6
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 5.1e-73 278.5 250 64.4
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 8.6e-73 277.7 221 68.8
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 8.6e-73 277.7 250 64.4
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.9e-72 276.6 246 64.6
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 4.3e-72 275.4 243 65.0
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 5.6e-72 275.0 248 63.3
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 2.8e-71 272.7 253 62.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 8.1e-71 271.2 232 65.5
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.1e-70 270.8 231 68.4
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.1e-70 270.8 245 62.9
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.8e-70 270.0 228 65.8
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.0e-70 268.9 248 62.1
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 5.2e-70 268.5 243 63.8
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 6.8e-70 268.1 240 62.5
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 6.8e-70 268.1 223 67.7
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.2e-69 267.3 255 62.0
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 9.9e-69 264.2 254 61.0
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 2.2e-68 263.1 249 59.8
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 3.7e-68 262.3 259 62.5
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 4.9e-68 261.9 244 60.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 5.4e-67 258.5 251 59.4
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.2e-66 257.3 252 58.3
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.5e-66 255.8 243 60.5
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.5e-66 255.8 243 60.5
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 4.6e-66 255.4 251 59.0
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 1.0e-65 254.2 246 62.2
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 8.6e-65 251.1 255 57.3
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.5e-64 250.4 252 57.5
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.9e-64 250.0 252 58.7
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 5.6e-64 248.4 246 57.7
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 5.6e-64 248.4 246 57.7
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 9.5e-64 247.7 255 57.6
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 4.7e-63 245.4 233 61.4
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.1e-62 244.2 234 59.0
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.1e-62 244.2 240 58.8
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 3.1e-62 242.7 252 56.3
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.1e-62 242.7 177 71.2
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 3.1e-62 242.7 255 56.9
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 2.6e-61 239.6 243 58.8
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 2.9e-60 236.1 226 61.9
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.8e-60 235.7 234 56.4
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.4e-60 234.6 235 56.6
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 4.2e-59 232.3 253 56.1
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.2e-58 230.7 252 56.0
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 1.2e-58 230.7 256 56.2
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.6e-57 224.9 247 52.2
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 7.6e-53 211.5 244 51.2
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 9.9e-53 211.1 245 50.2
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.7e-52 210.3 198 62.6
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 2.9e-52 209.5 244 50.8
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 2.9e-52 209.5 244 50.8
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.1e-51 207.6 236 51.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.1e-51 207.6 196 62.8
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.9e-51 206.8 182 64.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.7e-49 200.3 246 48.0
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 9.6e-48 194.5 131 79.4
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.6e-34 150.6 121 62.8
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 4.3e-32 142.5 133 61.7
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.3e-31 141.0 247 41.3
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.5e-24 117.5 145 53.8
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.3e-24 115.9 141 49.6
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 4.3e-24 115.9 75 78.7
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.3e-23 114.4 242 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 3.7e-23 112.8 169 42.0
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 5.0e-20 102.4 79 73.4
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 3.0e-17 93.2 87 55.2
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 8.8e-17 91.7 137 43.8
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 5.9e-13 79.0 86 55.8
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-12 77.4 115 44.3
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 1.9e-11 73.9 103 48.5
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.9e-11 73.9 62 61.3
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 7.4e-08 62.0 68 51.5


User provided reference genes

Program Settings