Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 9.2e-292 1006.1 497 100.0
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.0e-205 720.3 479 74.5
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-204 716.5 476 74.4
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 3.8e-197 691.8 478 71.5
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.9e-196 689.5 435 75.4
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.2e-196 688.3 485 71.5
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.6e-195 686.4 439 74.5
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 8.0e-195 684.1 458 72.5
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 1.4e-194 683.3 441 76.2
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.4e-194 683.3 442 74.4
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 5.2e-194 681.4 443 75.8
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 5.2e-194 681.4 455 73.0
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 4.4e-193 678.3 462 72.1
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 3.7e-192 675.2 456 72.6
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.1e-191 673.7 449 72.2
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 4.1e-191 671.8 439 74.3
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 9.2e-191 670.6 457 72.0
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 9.2e-191 670.6 456 73.2
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 2.0e-190 669.5 438 73.3
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.5e-190 668.7 434 74.0
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 3.5e-190 668.7 434 74.0
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.0e-189 667.2 439 73.1
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 2.3e-189 666.0 433 75.8
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.3e-189 666.0 436 73.6
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 2.9e-189 665.6 434 73.7
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.5e-188 662.5 435 73.8
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 4.3e-188 661.8 444 72.5
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 9.5e-188 660.6 436 73.2
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 9.5e-188 660.6 431 73.5
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.6e-187 659.8 436 74.1
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 2.1e-187 659.4 426 75.4
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.8e-187 659.1 442 73.1
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.8e-187 659.1 442 72.9
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 3.6e-187 658.7 442 72.9
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 8.0e-187 657.5 440 73.2
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.0e-186 657.1 437 73.0
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.0e-186 657.1 437 73.0
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 1.4e-186 656.8 426 75.1
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 1.4e-186 656.8 442 73.1
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.3e-186 656.0 442 73.3
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 3.0e-186 655.6 442 72.9
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.0e-186 655.6 435 73.3
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 4.0e-186 655.2 426 74.4
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 5.2e-186 654.8 442 72.9
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 5.2e-186 654.8 442 72.4
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 6.8e-186 654.4 428 75.0
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 6.8e-186 654.4 438 72.4
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 8.9e-186 654.1 466 69.7
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 1.2e-185 653.7 460 70.2
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.2e-185 653.7 446 70.2
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 2.0e-185 652.9 491 67.0
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 3.4e-185 652.1 429 73.7
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 3.4e-185 652.1 435 73.1
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 4.4e-185 651.7 443 73.1
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 5.7e-185 651.4 441 72.8
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 5.7e-185 651.4 435 73.3
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 7.5e-185 651.0 435 73.1
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 2.2e-184 649.4 441 72.3
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 2.9e-184 649.0 413 75.5
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.9e-184 649.0 436 72.2
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 4.9e-184 648.3 439 72.4
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 6.4e-184 647.9 425 73.6
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 6.4e-184 647.9 438 72.8
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 8.3e-184 647.5 437 71.9
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 1.1e-183 647.1 445 70.1
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.4e-183 646.7 454 71.1
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.8e-183 646.4 451 71.6
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 2.4e-183 646.0 438 71.7
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 3.2e-183 645.6 438 72.6
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 1.2e-182 643.7 447 69.8
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.2e-182 643.7 443 72.0
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.6e-182 643.3 441 70.7
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.0e-182 642.9 432 73.1
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 5.9e-182 641.3 438 71.9
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 7.8e-182 641.0 448 69.9
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.7e-181 639.8 435 71.7
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 2.3e-181 639.4 428 72.0
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 3.0e-181 639.0 440 71.6
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.0e-181 639.0 450 70.2
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.9e-181 638.6 452 69.0
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.1e-180 637.1 437 72.5
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 4.3e-180 635.2 442 70.4
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 7.3e-180 634.4 438 71.5
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 9.5e-180 634.0 434 71.2
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.0e-178 630.6 427 71.2
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 4.0e-178 628.6 455 66.6
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 4.0e-178 628.6 426 71.1
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.2e-177 627.1 424 71.7
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-177 625.2 434 71.4
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 4.4e-177 625.2 450 69.3
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 5.8e-177 624.8 433 70.0
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 5.8e-177 624.8 449 68.8
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 9.8e-177 624.0 450 69.3
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 3.7e-176 622.1 434 71.0
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 3.0e-173 612.5 433 70.2
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 6.2e-171 604.7 426 70.9
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 3.1e-170 602.4 424 67.5
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 2.0e-169 599.7 444 67.1
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 7.5e-169 597.8 425 69.9
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 2.2e-168 596.3 439 68.6
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.9e-168 595.9 473 63.6
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.3e-165 586.3 428 67.3
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 5.2e-162 575.1 434 65.9
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 5.2e-162 575.1 413 69.5
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.7e-160 570.1 384 74.0
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 8.4e-160 567.8 424 64.4
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 2.1e-158 563.1 389 71.2
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 3.3e-156 555.8 456 63.2
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 4.7e-155 552.0 399 68.9
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 8.1e-155 551.2 389 69.9
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 1.8e-154 550.1 443 61.9
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.4e-153 545.4 436 61.2
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 5.8e-153 545.0 440 61.8
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 9.9e-153 544.3 434 64.1
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.2e-152 543.1 429 62.0
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 4.9e-152 542.0 377 70.3
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 4.2e-151 538.9 451 62.5
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 5.4e-151 538.5 433 63.0
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 2.3e-149 533.1 441 60.1
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.1e-148 530.8 405 65.9
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 2.1e-147 526.6 427 63.2
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 3.6e-147 525.8 439 58.8
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 6.2e-147 525.0 422 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 8.1e-147 524.6 451 60.3
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.8e-146 523.5 445 58.2
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.8e-145 518.5 428 61.9
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 3.2e-143 512.7 437 61.1
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 7.4e-140 501.5 447 58.2
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 5.5e-135 485.3 445 55.1
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 7.9e-134 481.5 433 57.0
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 8.7e-133 478.0 443 54.6
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 8.7e-133 478.0 445 54.8
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 2.5e-132 476.5 433 56.6
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.5e-132 476.5 352 69.9
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.4e-130 469.9 453 55.0
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.2e-129 467.6 361 67.0
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 2.1e-126 456.8 375 60.3
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.1e-124 451.1 436 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 2.1e-123 446.8 445 53.3
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.1e-122 444.5 443 56.0
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 5.9e-121 438.7 414 55.1
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 8.5e-120 434.9 320 68.4
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.0e-112 411.4 431 51.3
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.1e-111 407.9 378 55.3
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 3.0e-109 399.8 382 56.3
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 5.1e-109 399.1 287 68.3
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 3.3e-108 396.4 389 56.0
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 2.5e-103 380.2 427 48.7
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 7.2e-103 378.6 230 76.5
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 9.7e-100 368.2 377 50.9
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.7e-88 330.9 385 52.5
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.5e-88 328.6 305 56.4
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.0e-81 307.4 174 80.5
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 8.0e-78 295.4 242 62.4
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 6.8e-77 292.4 246 61.0
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.0e-64 249.6 203 59.6
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 5.0e-64 249.6 203 59.6
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.8e-62 243.8 198 60.1
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.8e-62 243.8 198 60.1
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.8e-62 243.8 198 60.1
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.0e-56 225.3 212 56.1
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.0e-56 225.3 212 56.1
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.0e-56 225.3 212 56.1
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 1.9e-50 204.5 116 81.0
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 8.6e-48 195.7 113 77.0
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.1e-38 164.5 123 65.0
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 2.0e-36 157.9 86 84.9
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 4.9e-35 153.3 86 80.2
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 9.3e-34 149.1 162 53.1
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 1.2e-33 148.7 88 75.0
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.3e-32 145.2 88 72.7
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 7.3e-31 139.4 110 65.5
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 1.3e-27 128.6 76 76.3
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 3.5e-25 120.6 148 48.0
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 1.6e-22 111.7 79 64.6
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 8.1e-22 109.4 71 71.8
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 1.8e-21 108.2 57 80.7
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 4.0e-21 107.1 145 46.9
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 5.3e-21 106.7 54 85.2
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 6.9e-21 106.3 143 49.0
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.5e-20 105.1 64 68.8
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 1.8e-13 81.6 43 86.0
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 1.1e-10 72.4 43 72.1
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 4.2e-10 70.5 44 70.5


User provided reference genes

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