Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 0.0e+00 1498.0 732 100.0
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 8.2e-196 688.0 679 59.1
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 1.4e-195 687.2 679 59.1
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 1.4e-187 660.6 684 57.2
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 8.8e-182 641.3 585 60.0
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 7.7e-178 628.2 637 57.5
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 5.5e-176 622.1 639 55.2
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 7.2e-176 621.7 678 53.2
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 2.1e-175 620.2 593 57.7
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 3.6e-175 619.4 665 54.3
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 1.4e-174 617.5 663 54.4
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 1.8e-174 617.1 602 56.5
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 1.8e-174 617.1 616 56.2
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 3.9e-174 615.9 586 57.8
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 3.9e-174 615.9 560 60.5
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 5.1e-174 615.5 636 55.2
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 1.1e-173 614.4 599 57.4
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 3.3e-173 612.8 600 56.2
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 5.7e-173 612.1 628 55.4
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 9.7e-173 611.3 646 54.3
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 2.2e-172 610.1 607 56.0
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 3.7e-172 609.4 607 57.3
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 6.3e-172 608.6 620 56.0
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 8.2e-172 608.2 589 57.6
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.4e-171 607.4 648 53.1
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 1.8e-171 607.1 595 56.5
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 3.1e-171 606.3 636 54.4
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 9.1e-171 604.7 593 56.8
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 9.1e-171 604.7 593 56.8
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 1.2e-170 604.4 607 57.0
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 1.2e-170 604.4 612 55.6
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 2.6e-170 603.2 623 56.0
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 3.5e-170 602.8 636 54.1
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 7.7e-170 601.7 603 56.1
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 1.0e-169 601.3 592 56.8
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.3e-169 600.9 658 52.4
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 2.2e-169 600.1 565 57.7
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 2.9e-169 599.7 639 54.0
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 3.8e-169 599.4 628 55.6
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 6.5e-169 598.6 562 58.2
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 8.5e-169 598.2 569 57.3
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 1.4e-168 597.4 622 54.3
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 3.2e-168 596.3 625 54.7
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 3.2e-168 596.3 615 55.3
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 3.2e-168 596.3 618 53.9
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 4.2e-168 595.9 653 53.3
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 5.5e-168 595.5 633 54.2
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 1.2e-167 594.3 559 58.1
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.6e-167 594.0 607 55.4
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 1.6e-167 594.0 623 54.3
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 3.6e-167 592.8 605 55.2
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 6.1e-167 592.0 632 53.6
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 6.1e-167 592.0 619 55.3
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 8.0e-167 591.7 582 56.7
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 1.8e-166 590.5 640 53.9
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 3.0e-166 589.7 553 58.2
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 3.0e-166 589.7 634 53.2
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 3.9e-166 589.3 604 55.1
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 8.8e-166 588.2 548 58.9
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 1.1e-165 587.8 632 53.8
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.1e-165 587.8 624 54.8
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 1.1e-165 587.8 628 54.6
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 5.7e-165 585.5 570 56.3
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 6.3e-164 582.0 623 53.6
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 8.2e-164 581.6 596 54.9
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.1e-163 581.3 594 55.2
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 5.3e-163 578.9 619 53.2
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 3.5e-162 576.2 629 52.5
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 3.5e-162 576.2 629 52.5
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 4.5e-162 575.9 577 56.5
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 1.7e-161 573.9 609 53.7
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 2.2e-161 573.5 580 54.3
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 2.9e-161 573.2 610 53.1
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.8e-161 572.8 610 53.9
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 4.2e-160 569.3 623 53.3
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 5.5e-160 568.9 634 51.7
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 7.2e-160 568.5 664 50.8
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 1.6e-159 567.4 631 52.9
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 4.7e-159 565.8 611 52.4
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.4e-158 564.3 564 55.1
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 1.2e-157 561.2 621 51.5
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 6.3e-156 555.4 390 72.1
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 5.3e-155 552.4 597 51.3
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 7.0e-155 552.0 609 52.7
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 7.7e-154 548.5 592 53.9
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 7.7e-154 548.5 629 50.2
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.3e-153 547.7 619 52.3
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 2.2e-153 547.0 622 51.8
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 2.9e-153 546.6 618 50.6
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 7.2e-152 542.0 541 54.3
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 1.4e-150 537.7 392 68.9
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 1.1e-147 528.1 623 49.1
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 8.9e-142 508.4 588 47.8
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 2.4e-139 500.4 626 47.1
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 2.5e-136 490.3 501 56.3
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 8.0e-135 485.3 612 47.2
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 3.4e-133 479.9 658 46.0
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.2e-132 477.2 438 55.5
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 8.3e-132 475.3 445 59.1
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 7.8e-122 442.2 550 47.6
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 1.7e-121 441.0 637 44.7
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 4.3e-120 436.4 602 47.0
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 9.9e-117 425.2 313 68.4
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.4e-110 404.1 553 42.9
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 6.8e-110 402.5 303 67.7
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 1.4e-107 394.8 353 60.6
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 2.4e-107 394.0 364 59.3
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.1e-104 385.2 541 42.9
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 4.8e-103 379.8 604 39.7
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 1.1e-99 368.6 524 42.6
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 6.0e-98 362.8 535 41.7
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.9e-96 357.8 382 54.7
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.3e-96 357.1 289 64.0
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 1.7e-92 344.7 432 46.8
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 3.8e-92 343.6 423 49.4
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 7.6e-85 319.3 437 46.9
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.3e-84 318.5 523 38.8
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 1.9e-75 288.1 645 32.2
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.0e-69 268.1 515 35.5
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 6.7e-65 253.1 243 54.3
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.7e-63 248.4 228 56.6
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 3.7e-63 247.3 374 44.7
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 6.1e-50 203.4 193 56.5
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 1.6e-45 188.7 374 35.6
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 5.9e-45 186.8 112 76.8
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 7.7e-45 186.4 269 42.8
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 7.2e-43 179.9 240 38.8
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 1.6e-42 178.7 322 39.1
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 6.8e-41 173.3 310 39.7
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.5e-40 172.2 117 68.4
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 2.2e-39 168.3 269 40.1
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 1.7e-36 158.7 239 36.8
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 4.2e-35 154.1 230 36.1
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 4.7e-34 150.6 347 28.8
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 2.0e-29 135.2 238 38.7
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 2.7e-29 134.8 246 32.9
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 4.7e-26 124.0 117 59.8
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 2.3e-25 121.7 92 69.6
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 5.7e-24 117.1 113 59.3
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 4.9e-23 114.0 151 42.4
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 2.8e-18 98.2 115 56.5
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 8.0e-18 96.7 118 52.5
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 3.1e-17 94.7 144 41.0
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.2e-16 92.8 50 82.0
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 4.6e-13 80.9 41 87.8
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 9.5e-11 73.2 108 43.5
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 8.1e-10 70.1 38 92.1
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 8.3e-07 60.1 38 73.7


User provided reference genes

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