Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 0.0e+00 1189.9 583 100.0
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.1e-263 912.1 489 89.4
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.8e-262 909.1 489 89.4
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.5e-253 879.4 563 78.2
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 3.7e-252 874.8 491 85.3
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.2e-250 869.8 550 78.7
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 2.7e-250 868.6 564 77.1
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.7e-250 868.6 460 89.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.7e-250 868.6 530 80.6
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 3.5e-250 868.2 482 85.7
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 4.6e-250 867.8 564 77.0
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 6.0e-250 867.5 495 83.8
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 6.0e-250 867.5 573 76.3
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 6.0e-250 867.5 487 84.6
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.7e-249 865.9 492 85.4
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 5.1e-249 864.4 576 75.3
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.3e-248 861.3 486 84.0
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 4.3e-248 861.3 503 82.3
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 3.6e-247 858.2 564 76.1
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.6e-247 858.2 559 75.7
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 5.2e-246 854.4 545 77.4
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 6.8e-246 854.0 560 76.4
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 8.9e-246 853.6 558 76.2
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.2e-245 853.2 562 77.2
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.0e-245 852.4 527 79.5
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.4e-245 851.7 498 81.5
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.4e-245 851.3 535 77.6
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.3e-244 849.7 554 75.6
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.3e-244 849.7 488 83.8
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.7e-244 849.4 581 73.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.2e-244 849.0 490 82.0
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 3.8e-244 848.2 504 80.6
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 3.8e-244 848.2 562 75.8
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.4e-243 846.3 493 82.2
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 2.4e-243 845.5 553 74.3
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.4e-243 845.5 555 74.4
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 7.1e-243 844.0 546 74.5
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.3e-243 843.6 542 76.2
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.2e-242 843.2 539 77.0
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.6e-242 842.8 505 79.8
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.6e-242 842.8 550 76.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 2.7e-242 842.0 527 77.2
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.6e-242 841.3 550 74.4
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.3e-241 839.7 544 76.3
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.3e-241 839.0 539 76.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 3.0e-241 838.6 531 78.0
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 3.0e-241 838.6 497 81.5
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 8.7e-241 837.0 565 74.2
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 8.7e-241 837.0 495 80.2
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.9e-240 835.9 557 74.7
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 1.9e-240 835.9 484 81.2
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.9e-240 835.9 473 83.5
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 4.3e-240 834.7 538 75.8
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 7.3e-240 833.9 520 77.3
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 7.3e-240 833.9 548 74.8
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 9.6e-240 833.6 504 79.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.6e-239 832.8 538 76.2
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.8e-239 832.0 490 80.2
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 6.2e-239 830.9 534 76.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 6.2e-239 830.9 562 73.3
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 8.1e-239 830.5 534 76.0
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.1e-238 830.1 521 78.1
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.4e-238 829.7 507 78.5
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.8e-238 829.3 555 74.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 3.1e-238 828.6 484 81.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.0e-238 828.2 554 74.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 6.9e-238 827.4 503 78.9
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 6.9e-238 827.4 584 71.6
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 9.0e-238 827.0 486 81.5
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 9.0e-238 827.0 535 76.1
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 2.0e-237 825.9 484 80.6
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 3.4e-237 825.1 509 77.2
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 3.4e-237 825.1 505 78.6
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 5.8e-237 824.3 497 78.9
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 9.9e-237 823.5 533 74.5
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.3e-236 823.2 558 72.6
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.9e-236 822.0 502 78.7
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 3.8e-236 821.6 509 77.6
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.9e-236 821.2 502 78.3
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.4e-235 819.7 513 76.8
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.9e-235 819.3 487 78.4
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.4e-235 818.9 515 76.5
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 5.4e-235 817.8 531 75.0
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.6e-234 816.2 497 78.1
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.7e-234 815.5 536 74.8
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.5e-234 815.1 485 80.0
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 6.0e-234 814.3 485 80.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.0e-234 814.3 502 77.9
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 7.9e-234 813.9 490 78.4
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.0e-233 813.5 458 83.8
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 3.0e-233 812.0 536 74.6
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 3.0e-233 812.0 494 78.3
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 6.6e-233 810.8 432 88.2
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.5e-232 808.9 482 79.7
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 9.6e-232 807.0 540 74.8
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.3e-231 806.6 540 74.6
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 3.6e-231 805.1 460 81.7
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.2e-228 795.8 465 80.2
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.4e-228 794.3 472 79.0
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-227 793.1 491 76.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 4.2e-227 791.6 524 73.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 6.0e-226 787.7 446 82.3
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 7.9e-226 787.3 531 73.3
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.3e-225 786.6 531 73.3
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.1e-224 783.5 480 76.5
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.3e-223 780.0 499 75.6
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 4.0e-222 775.0 482 76.8
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 4.9e-220 768.1 490 76.5
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.7e-218 762.3 447 79.6
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 8.7e-217 757.3 484 75.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 8.2e-215 750.7 557 68.2
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.6e-210 736.5 515 70.3
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.9e-210 734.2 534 67.2
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.8e-204 715.3 482 73.0
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 7.2e-203 711.1 493 70.8
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.1e-200 703.7 489 71.8
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.7e-197 691.0 363 90.6
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.9e-195 686.4 419 80.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 8.8e-193 677.6 462 68.8
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 3.3e-192 675.6 363 89.0
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.9e-187 659.8 464 67.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.9e-187 659.8 363 85.7
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.5e-187 659.4 496 64.3
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.7e-170 602.1 379 82.6
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.5e-168 597.0 428 68.7
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.5e-155 553.9 377 70.0
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.2e-152 544.3 450 60.4
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 8.1e-146 521.5 416 65.9
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 8.4e-135 485.0 270 84.8
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 4.6e-133 479.2 267 85.0
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 5.1e-132 475.7 276 80.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 5.2e-129 465.7 409 60.1
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 3.6e-122 443.0 471 49.0
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 8.4e-119 431.8 482 51.0
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.3e-100 371.3 193 90.2
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.1e-99 368.2 444 46.6
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 5.0e-95 352.8 224 73.7
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 3.2e-94 350.1 195 82.6
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 4.8e-90 336.3 263 66.9
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 3.1e-89 333.6 184 84.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 6.5e-87 325.9 409 45.2
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 8.5e-79 298.9 163 85.9
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 9.1e-73 278.9 163 77.3
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.0e-71 275.4 481 38.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.7e-69 267.3 395 40.5
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.8e-68 264.6 140 90.0
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.3e-68 264.2 419 38.9
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.0e-60 238.8 197 61.9
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 4.5e-56 223.4 530 32.6
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-51 208.8 117 83.8
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.3e-50 205.3 120 82.5
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 2.2e-50 204.5 440 33.2
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 2.8e-45 187.6 107 84.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 8.0e-45 186.0 100 87.0
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 4.6e-40 170.2 155 57.4
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.3e-39 167.9 112 72.3
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 3.3e-38 164.1 94 80.9
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.5e-38 162.5 94 83.0
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.9e-31 140.6 104 67.3
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 2.1e-29 134.8 97 67.0
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.2e-28 130.2 65 90.8
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 6.8e-28 129.8 77 75.3
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 5.4e-25 120.2 137 45.3
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.3e-22 110.9 236 33.9
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 7.6e-19 99.8 64 73.4
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 4.4e-11 73.9 78 55.1
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 4.2e-09 67.4 38 73.7
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 4.2e-09 67.4 58 55.2
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.0e-07 61.2 50 56.0
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 9.6e-06 56.2 53 50.9


User provided reference genes

Program Settings