Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.0e-56 223.4 129 100.0
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.1e-52 209.9 129 93.0
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.0e-52 209.1 129 92.2
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.0e-52 209.1 129 92.2
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.3e-52 208.4 129 92.2
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 5.7e-52 207.6 129 92.2
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 9.7e-52 206.8 129 90.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.7e-51 206.1 129 91.5
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.7e-51 206.1 129 91.5
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.2e-51 205.7 129 90.7
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 2.8e-51 205.3 129 91.5
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.1e-50 203.4 129 89.1
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.1e-50 203.4 129 90.7
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.1e-50 203.4 129 90.7
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.1e-50 203.4 129 90.7
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.1e-50 203.4 129 90.7
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.4e-50 203.0 129 89.9
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.4e-50 203.0 129 90.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.8e-50 202.6 130 90.8
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.8e-50 202.6 129 89.9
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 2.4e-50 202.2 127 89.8
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.1e-50 201.8 131 90.1
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 4.1e-50 201.4 129 89.1
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 2.0e-49 199.1 127 88.2
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 3.5e-49 198.4 129 87.6
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 5.9e-49 197.6 129 87.6
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 5.9e-49 197.6 129 86.8
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 5.9e-49 197.6 129 89.1
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 88.4
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.0e-48 196.8 132 87.9
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.3e-48 196.4 133 87.2
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.3e-48 196.4 130 88.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.7e-48 196.1 128 87.5
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 2.2e-48 195.7 128 88.3
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 2.9e-48 195.3 133 86.5
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 3.8e-48 194.9 130 86.9
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 6.5e-48 194.1 129 86.8
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 8.5e-48 193.7 133 85.0
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 86.0
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 86.8
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 1.9e-47 192.6 132 87.1
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 3.2e-47 191.8 132 86.4
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.2e-47 191.8 129 86.0
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 4.2e-47 191.4 129 84.5
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 4.2e-47 191.4 132 86.4
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 5.5e-47 191.0 130 86.2
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 7.2e-47 190.7 131 87.0
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.2e-47 190.7 126 85.7
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 86.8
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.2e-46 189.9 132 85.6
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-46 189.9 129 82.9
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.2e-46 189.9 129 82.9
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.2e-46 189.9 129 82.9
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.6e-46 189.5 129 86.0
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-46 189.5 132 84.8
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 1.6e-46 189.5 129 85.3
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 2.1e-46 189.1 133 85.0
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 2.1e-46 189.1 129 85.3
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 2.1e-46 189.1 116 93.1
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 2.1e-46 189.1 129 84.5
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.1e-46 189.1 150 77.3
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 4.7e-46 188.0 127 83.5
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 8.0e-46 187.2 129 85.3
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.8e-45 186.0 127 81.9
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.3e-45 185.7 132 83.3
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.7e-45 184.1 117 89.7
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 1.2e-44 183.3 161 70.8
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 2.6e-44 182.2 116 91.4
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 4.4e-44 181.4 116 89.7
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 5.7e-44 181.0 121 86.8
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 5.7e-44 181.0 128 82.0
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 5.7e-44 181.0 129 83.7
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 7.5e-44 180.6 117 90.6
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 9.7e-44 180.3 116 88.8
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.3e-43 179.9 130 84.6
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 2.2e-43 179.1 120 86.7
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 3.7e-43 178.3 121 84.3
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 3.7e-43 178.3 122 84.4
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 3.7e-43 178.3 116 88.8
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 3.7e-43 178.3 129 82.2
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 4.8e-43 177.9 122 83.6
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 6.3e-43 177.6 129 81.4
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-42 176.8 119 88.2
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.4e-42 176.4 116 87.1
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 3.1e-42 175.3 116 87.1
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 2.0e-41 172.6 128 80.5
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 2.7e-41 172.2 114 86.8
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 2.7e-41 172.2 129 79.1
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 4.5e-41 171.4 126 79.4
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 7.7e-41 170.6 130 80.8
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.7e-40 169.5 152 70.4
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 5.0e-40 167.9 133 78.2
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 6.5e-40 167.5 112 85.7
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.2e-38 163.3 129 76.0
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-38 163.3 126 77.0
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 3.6e-38 161.8 116 82.8
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.8e-37 159.5 131 77.1
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.8e-37 159.5 131 77.1
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 2.3e-37 159.1 129 78.3
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 3.0e-37 158.7 132 75.8
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.2e-37 157.9 112 83.0
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.0e-36 156.0 130 76.9
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.7e-35 152.9 116 80.2
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.7e-35 151.8 128 73.4
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 6.3e-35 151.0 132 73.5
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 8.3e-35 150.6 132 73.5
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-34 150.2 132 73.5
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 7.0e-34 147.5 128 69.5
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 7.7e-33 144.1 132 71.2
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 3.8e-32 141.7 114 74.6
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 6.5e-32 141.0 129 69.0
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 1.1e-31 140.2 119 75.6
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.5e-31 139.8 110 75.5
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 2.8e-30 135.6 95 82.1
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.8e-29 132.9 94 79.8
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 4.0e-29 131.7 131 66.4
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-28 130.2 142 60.6
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 1.3e-27 126.7 82 87.8
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 6.3e-27 124.4 86 83.7
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 6.3e-27 124.4 129 63.6
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.8e-26 122.9 83 85.5
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 2.4e-26 122.5 80 82.5
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 7.0e-26 120.9 128 63.3
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.7e-25 119.0 134 59.7
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.3e-24 116.7 125 60.8
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 8.6e-24 114.0 66 95.5
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 3.3e-23 112.1 68 89.7
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 3.6e-22 108.6 136 57.4
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.0e-21 107.1 70 85.7
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 5.7e-20 101.3 68 83.8
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 9.8e-20 100.5 270 35.6
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 2.9e-19 99.0 121 53.7
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 2.0e-17 92.8 123 52.0
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 5.9e-17 91.3 60 86.7
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 7.8e-17 90.9 64 84.4
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.3e-16 90.1 54 92.6
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 5.0e-16 88.2 58 82.8
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 7.3e-15 84.3 54 85.2
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.1e-14 82.8 61 77.0
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 3.6e-14 82.0 87 52.9
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 1.8e-13 79.7 75 69.3
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.2e-09 67.0 48 85.4
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 4.3e-07 58.5 40 80.0
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 2.8e-06 55.8 33 90.9


User provided reference genes

Program Settings