Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.4e-292 1008.8 489 100.0
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.4e-215 752.3 489 74.0
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 3.0e-210 735.3 489 72.2
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.5e-209 733.0 489 71.6
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.1e-200 702.6 479 71.4
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.3e-189 666.8 489 65.8
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.1e-188 663.7 490 64.9
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.1e-188 663.7 472 66.7
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 1.2e-187 660.2 489 65.2
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 1.3e-186 656.8 467 67.2
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.3e-186 656.0 456 66.7
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 6.7e-186 654.4 485 65.2
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 8.7e-186 654.1 428 70.1
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 2.5e-185 652.5 429 70.4
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.3e-185 651.7 400 73.2
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 7.4e-185 651.0 472 65.5
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 1.3e-184 650.2 486 62.8
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.6e-184 649.8 460 67.4
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 2.1e-184 649.4 462 66.0
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.8e-184 649.0 480 64.0
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.1e-183 647.1 429 69.5
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.1e-183 647.1 439 69.2
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.8e-183 646.4 495 62.6
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 6.9e-183 644.4 427 68.6
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 6.9e-183 644.4 463 65.2
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 2.0e-182 642.9 486 64.0
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 3.4e-182 642.1 462 64.9
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 5.8e-182 641.3 441 67.6
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 5.8e-182 641.3 388 74.2
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.0e-181 640.6 441 68.0
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 1.7e-181 639.8 478 62.8
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 8.4e-181 637.5 410 71.7
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 8.4e-181 637.5 462 64.9
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.1e-180 637.1 475 64.4
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.4e-180 636.7 401 71.3
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 5.5e-180 634.8 433 67.0
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 7.2e-180 634.4 465 64.5
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 9.3e-180 634.0 473 64.1
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 1.2e-179 633.6 478 63.4
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 2.1e-179 632.9 473 63.8
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.5e-179 632.1 404 70.3
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 4.6e-179 631.7 421 67.9
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 6.1e-179 631.3 476 62.2
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 7.9e-179 630.9 460 65.0
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.0e-178 630.6 432 66.4
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.3e-178 630.2 396 71.2
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 3.9e-178 628.6 487 61.8
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 3.9e-178 628.6 429 68.1
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.7e-178 627.9 460 64.8
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 6.7e-178 627.9 415 68.0
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 8.7e-178 627.5 470 64.7
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.1e-177 627.1 482 62.2
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.5e-177 626.7 435 66.7
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.9e-177 626.3 421 67.2
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 4.3e-177 625.2 420 67.9
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 4.3e-177 625.2 473 61.7
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 5.7e-177 624.8 428 67.3
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 9.7e-177 624.0 421 67.2
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 2.2e-176 622.9 404 69.6
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 4.8e-176 621.7 491 61.9
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 6.3e-176 621.3 484 62.2
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 8.2e-176 620.9 422 69.0
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.4e-175 620.2 477 62.3
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 3.1e-175 619.0 456 63.6
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 3.1e-175 619.0 396 71.0
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 1.0e-173 614.0 441 64.2
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.0e-173 614.0 405 68.1
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 2.9e-173 612.5 476 62.0
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.9e-173 612.5 506 59.9
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 6.5e-173 611.3 474 60.8
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 8.5e-173 610.9 430 64.9
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.5e-172 609.4 480 61.2
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.6e-171 605.5 404 68.3
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 4.6e-171 605.1 432 64.6
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.4e-170 603.6 408 69.6
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.3e-170 602.8 436 64.4
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 6.7e-170 601.3 479 60.1
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.1e-169 600.5 422 67.1
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.1e-169 600.5 413 65.4
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 2.5e-169 599.4 417 67.1
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 2.5e-169 599.4 424 65.6
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 5.7e-169 598.2 406 67.7
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 2.2e-168 596.3 412 67.7
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 2.2e-168 596.3 479 60.1
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 3.7e-168 595.5 478 59.8
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 1.1e-167 594.0 480 59.8
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 1.1e-167 594.0 480 59.8
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 1.8e-167 593.2 479 59.5
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 6.9e-167 591.3 428 64.7
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 2.6e-166 589.3 394 69.0
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.3e-165 587.0 405 66.9
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.7e-165 586.6 473 59.8
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 3.2e-164 582.4 486 58.4
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.1e-163 579.7 353 74.2
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 5.7e-161 571.6 350 73.1
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 5.7e-161 571.6 478 60.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 5.0e-157 558.5 414 61.8
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 7.2e-156 554.7 396 68.9
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 3.1e-151 539.3 357 69.2
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 2.0e-150 536.6 420 63.6
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 6.5e-149 531.6 492 56.5
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 9.4e-148 527.7 353 66.0
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 3.5e-142 509.2 417 59.2
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.1e-140 504.2 342 68.7
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 4.1e-135 485.7 382 60.7
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 9.2e-127 458.0 396 55.1
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.5e-124 450.7 404 53.5
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.2e-123 447.6 413 51.8
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 4.9e-120 435.6 452 50.9
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.9e-119 433.7 404 50.7
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.6e-110 404.1 323 63.2
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 7.3e-108 395.2 435 45.3
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 6.8e-106 388.7 258 72.5
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 4.5e-89 332.8 243 59.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 4.9e-88 329.3 232 67.7
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 5.1e-77 292.7 185 64.3
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.4e-71 274.6 258 53.1
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 4.1e-66 256.5 161 68.9
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.0e-61 241.9 165 67.9
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 3.4e-57 226.9 217 56.2
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 3.6e-54 216.9 160 63.1
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 3.0e-53 213.8 130 68.5
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 3.5e-41 173.7 129 59.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 3.6e-30 137.1 390 30.3
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 5.2e-29 133.3 461 26.0
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 2.5e-23 114.4 86 61.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.8e-21 108.2 343 27.7
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 7.0e-18 96.3 360 28.9
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 4.4e-12 77.0 54 68.5
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 3.7e-11 73.9 80 53.8
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 7.0e-10 69.7 104 35.6
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 3.5e-09 67.4 166 33.1
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 3.9e-08 63.9 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 3.9e-08 63.9 61 52.5
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 2.5e-07 61.2 206 25.2
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 4.3e-07 60.5 110 38.2
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 9.5e-07 59.3 209 24.9
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 1.6e-06 58.5 58 46.6
CsaV3_1G000320 Cucumis sativus L. HOM05D005705 ORTHO05D007152 2.1e-06 58.2 194 24.2
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 2.8e-06 57.8 198 24.2
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 3.6e-06 57.4 207 23.7
Eucgr.B00079 Eucalyptus grandis HOM05D005705 ORTHO05D007152 3.6e-06 57.4 190 25.8
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 3.6e-06 57.4 282 22.0


User provided reference genes

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