Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 4796.5 2400 100.0
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 3291.5 2406 68.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 3279.6 2406 69.1
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 3264.6 2406 68.9
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 3141.3 2405 66.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2914.8 2403 61.8
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2745.7 2446 58.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2662.9 2446 56.7
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2654.8 2443 57.0
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2629.4 2436 56.3
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2617.8 2458 55.8
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2611.6 2442 55.3
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2583.9 2474 55.4
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2578.9 2440 54.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2577.0 2452 55.0
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2575.4 2439 55.1
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2574.7 2452 54.9
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2573.9 2420 56.3
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2570.0 2428 55.1
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2561.6 2472 54.9
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2552.3 2466 54.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2546.5 2444 54.7
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2545.0 2445 55.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2527.3 2416 54.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2518.0 2438 53.7
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2514.2 2377 55.4
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2511.1 2446 54.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2505.3 2438 53.6
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2498.4 2440 54.4
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2494.9 2472 53.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2494.2 2401 54.9
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2493.4 2438 54.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2487.2 2438 53.3
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2486.8 2472 52.8
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2481.1 2472 52.9
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2479.1 2431 54.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2476.8 2472 52.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2454.5 2426 53.3
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2453.7 2427 53.5
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2449.1 2430 53.3
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2447.2 2428 53.1
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2444.5 2436 53.4
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2431.8 2441 52.8
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2431.8 2430 52.8
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2431.4 2433 53.5
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2430.6 2478 52.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2428.3 2441 53.3
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2415.6 2426 52.7
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2415.2 2428 52.3
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2368.2 2452 52.2
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2357.0 2428 52.0
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2353.2 2387 51.9
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2351.2 2461 51.4
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2348.9 2429 50.9
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2348.2 2386 52.7
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2344.3 2439 51.7
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2342.4 2435 51.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2323.1 2447 51.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2319.3 2470 50.2
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2316.6 2470 50.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2310.0 2429 50.9
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2307.3 2423 51.3
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2305.0 2432 50.6
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2303.1 2431 51.4
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2302.3 2113 56.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2295.4 2413 51.3
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2281.5 2432 50.9
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2270.4 2420 49.8
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2263.8 2441 50.2
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2253.8 2419 49.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2246.5 2410 49.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2245.7 2414 49.1
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2220.7 2445 49.1
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2217.6 2420 48.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2212.2 2420 49.3
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2206.0 2419 49.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2197.5 2419 49.2
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2192.5 2447 48.7
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2192.2 2419 48.8
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2191.4 2415 48.6
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2183.3 2442 48.7
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2181.0 2429 48.4
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2162.1 2438 48.9
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2147.9 2423 48.2
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2124.0 1952 57.4
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2122.8 2075 54.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2087.4 2438 48.2
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2036.5 2236 49.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1989.9 2388 45.5
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1958.3 1847 55.1
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1950.3 2422 45.3
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1828.5 2514 42.5
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1669.8 1467 58.0
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1665.6 1469 57.9
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1658.7 2421 40.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1586.2 1532 55.9
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1545.0 1637 51.3
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1399.0 1394 53.7
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1389.0 1452 51.4
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1335.1 1097 61.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1273.5 1563 44.7
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1252.3 1376 50.1
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1197.2 1405 47.9
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1164.8 1156 54.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1110.5 1033 55.3
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.6e-293 1013.1 1011 52.0
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 7.9e-272 942.2 1028 48.0
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 5.1e-271 939.5 2564 28.7
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.8e-266 923.3 2106 31.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 3.1e-252 877.1 1395 39.2
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 3.8e-250 870.2 2137 30.2
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 8.5e-234 815.8 906 47.2
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 4.1e-228 797.0 1482 35.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.9e-217 761.5 849 47.9
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 7.8e-203 713.0 2395 26.9
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 7.3e-193 679.9 765 44.3
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.3e-178 632.5 819 43.5
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.6e-176 625.5 807 44.6
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-158 565.8 578 50.7
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.7e-112 412.9 453 49.4
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.0e-109 403.7 474 46.2
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 8.8e-106 390.6 264 71.6
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 4.8e-104 384.8 312 58.3
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.5e-100 373.2 475 44.0
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.3e-85 323.6 328 49.4
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 5.2e-82 311.6 383 43.3
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 2.9e-80 305.8 329 48.0
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.9e-79 303.1 320 52.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-67 263.8 341 41.3
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 5.4e-63 248.4 444 36.7
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 7.1e-63 248.1 491 31.0
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 9.2e-63 247.7 222 54.1
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.4e-55 223.8 150 72.0
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 7.3e-52 211.5 277 45.8
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.6e-52 211.1 340 38.8
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.0e-49 203.4 264 47.7
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 2.9e-48 199.5 122 79.5
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.1e-44 187.6 184 51.6
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.5e-44 187.2 788 24.7
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 3.7e-43 182.6 154 60.4
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 4.2e-39 169.1 139 68.3
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.3e-37 163.3 191 48.7
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 7.4e-36 158.3 110 70.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 4.8e-35 155.6 969 22.1
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.5e-33 150.6 147 51.7
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.0e-32 147.9 219 37.9
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 1.3e-32 147.5 319 33.9
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.2e-31 142.5 100 68.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-23 117.5 81 70.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-22 114.4 277 26.7
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 7.4e-20 105.1 320 29.7
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.8e-19 103.2 123 41.5
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-18 100.9 133 41.4
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-17 97.8 137 42.3
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.4e-15 90.9 106 41.5
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 2.7e-14 86.7 105 46.7
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.1e-12 81.3 69 50.7
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.4e-12 79.3 195 29.2
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.4e-10 74.3 118 35.6
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.3e-10 72.4 113 36.3
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.9e-09 68.9 72 50.0
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 7.7e-09 68.6 129 37.2
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 7.7e-09 68.6 100 39.0
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 7.7e-09 68.6 78 43.6
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.5e-08 65.1 42 81.0
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.2e-07 63.2 127 28.3


User provided reference genes

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