Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 3.4e-192 674.9 345 100.0
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.6e-130 469.9 345 70.7
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 4.2e-126 455.3 325 71.4
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 2.7e-125 452.6 345 68.7
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 4.2e-118 428.7 342 63.5
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.1e-116 421.8 341 61.9
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.1e-116 421.8 341 61.9
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 7.4e-115 417.9 330 64.5
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.3e-114 417.2 329 63.2
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.8e-114 416.0 341 62.5
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.5e-112 410.2 342 61.7
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 2.6e-112 409.5 330 62.7
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 3.4e-112 409.1 344 61.3
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 7.7e-112 407.9 344 61.0
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.0e-111 407.5 341 61.0
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 2.2e-111 406.4 332 61.1
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 1.1e-110 404.1 340 60.6
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.9e-110 403.3 341 59.5
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.9e-110 403.3 335 62.1
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.2e-110 402.5 331 62.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 4.2e-110 402.1 341 60.4
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 7.2e-110 401.4 335 61.2
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 7.2e-110 401.4 335 62.1
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 9.4e-110 401.0 341 61.3
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 3.6e-109 399.1 346 59.2
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.6e-109 399.1 344 59.9
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 3.6e-109 399.1 341 58.7
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 4.7e-109 398.7 341 61.3
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 7.9e-109 397.9 341 58.9
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 7.9e-109 397.9 345 58.8
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 7.9e-109 397.9 338 60.4
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 7.9e-109 397.9 341 60.1
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.0e-108 397.5 335 61.5
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.0e-108 397.5 323 62.8
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 1.4e-108 397.1 335 60.9
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.8e-108 396.7 346 60.1
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.8e-108 396.7 338 60.1
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 3.0e-108 396.0 347 57.9
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 3.0e-108 396.0 342 60.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 3.0e-108 396.0 347 60.2
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 5.2e-108 395.2 350 60.3
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 5.2e-108 395.2 343 59.8
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.2e-108 395.2 338 59.8
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.7e-108 394.8 343 59.8
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 6.7e-108 394.8 347 59.4
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.7e-108 394.8 343 62.1
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.1e-107 394.0 333 60.1
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.5e-107 393.7 347 57.9
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.5e-107 393.7 339 58.4
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.0e-107 393.3 333 59.8
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 3.3e-107 392.5 348 60.3
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 4.4e-107 392.1 339 58.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 4.4e-107 392.1 333 58.9
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 4.4e-107 392.1 348 57.2
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 7.4e-107 391.3 343 56.9
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.4e-107 391.3 333 59.5
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.4e-107 391.3 333 59.8
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 9.7e-107 391.0 345 57.1
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.7e-107 391.0 333 59.8
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-106 390.6 333 58.9
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.3e-106 390.6 324 63.3
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.2e-106 389.8 347 61.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 2.2e-106 389.8 343 57.4
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 3.7e-106 389.0 326 61.7
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 3.7e-106 389.0 344 58.4
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.7e-106 389.0 333 59.5
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 4.8e-106 388.7 346 57.5
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 6.3e-106 388.3 330 61.5
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 8.2e-106 387.9 344 59.6
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.1e-105 387.5 345 56.5
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.1e-105 387.5 333 58.0
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 4.1e-105 385.6 333 58.6
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 7.0e-105 384.8 333 58.0
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 7.0e-105 384.8 333 58.6
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.2e-104 384.0 341 57.5
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 3.5e-104 382.5 325 61.2
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 5.9e-104 381.7 345 56.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.0e-103 380.9 254 75.6
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.0e-103 380.9 343 58.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.0e-103 380.9 341 56.3
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.7e-103 380.2 345 58.3
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.9e-103 379.4 338 58.3
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 6.5e-103 378.3 340 58.8
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 8.5e-103 377.9 343 58.3
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 5.5e-102 375.2 328 57.3
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 9.4e-102 374.4 324 60.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.1e-101 373.2 374 52.4
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.7e-101 372.9 324 60.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 6.1e-101 371.7 324 60.2
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-100 369.4 338 53.6
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-100 369.4 338 53.6
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 4.0e-100 369.0 341 57.2
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 6.7e-100 368.2 324 60.2
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 3.3e-99 365.9 332 57.5
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.3e-98 364.0 343 56.9
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 2.8e-98 362.8 322 56.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.4e-97 360.5 324 55.9
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 5.3e-97 358.6 330 54.8
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 7.0e-97 358.2 324 55.6
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 9.1e-97 357.8 339 55.5
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.6e-96 357.1 339 57.2
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.6e-96 357.1 341 55.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 3.8e-95 352.4 343 54.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.1e-93 346.7 330 55.8
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 4.7e-93 345.5 271 63.1
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 6.1e-93 345.1 345 53.9
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 3.0e-92 342.8 338 55.3
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 2.0e-91 340.1 346 54.3
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 7.5e-91 338.2 347 54.8
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.1e-89 334.3 288 58.7
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.0e-87 325.5 329 48.0
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.0e-83 313.5 333 53.8
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 6.4e-74 282.0 357 42.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 9.8e-67 258.1 186 70.4
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 3.9e-63 246.1 355 40.0
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.2e-58 230.3 249 51.8
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 3.5e-56 223.0 231 50.2
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.4e-52 211.1 324 38.0
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 8.9e-52 208.4 180 56.1
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 7.6e-51 205.3 180 55.6
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 3.8e-50 203.0 165 61.2
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 3.0e-47 193.4 147 68.7
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 3.3e-46 189.9 294 37.4
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 2.7e-40 170.2 135 63.0
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.3e-34 151.4 138 55.1
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 8.4e-34 148.7 263 32.7
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.0e-31 141.7 213 40.4
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 3.9e-31 139.8 305 29.2
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.6e-29 134.4 171 42.7
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.1e-28 131.7 100 61.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 3.1e-28 130.2 119 56.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 5.3e-28 129.4 100 66.0
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 6.9e-28 129.0 169 40.8
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.3e-26 124.8 118 51.7
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.7e-26 124.4 122 56.6
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 2.9e-26 123.6 100 64.0
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.4e-26 122.1 120 50.0
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.9e-25 120.9 109 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.4e-25 120.6 181 39.2
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 4.2e-25 119.8 102 60.8
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 5.5e-25 119.4 208 39.9
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 5.5e-25 119.4 99 61.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 4.9e-18 96.3 84 59.5
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 4.9e-18 96.3 84 59.5
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.1e-17 95.1 124 46.0
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 9.3e-17 92.0 114 43.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.6e-16 89.7 120 46.7
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 5.7e-14 82.8 140 37.9
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 4.5e-11 73.2 102 42.2
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.0e-10 72.0 129 38.8
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 9.3e-09 65.5 52 59.6
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.7e-08 63.9 48 66.7
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 3.9e-07 60.1 43 69.8
C09p68370 Brassica napus HOM05D001610 ORTHO05D001585 1.1e-06 58.5 201 25.9
BolC9t59584H Brassica oleracea HOM05D001610 ORTHO05D001585 1.5e-06 58.2 201 25.9
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 1.5e-06 58.2 120 36.7
Gohir.A12G011100 Gossypium hirsutum HOM05D001610 ORTHO05D001585 7.4e-06 55.8 208 25.0
Gohir.D12G011500 Gossypium hirsutum HOM05D001610 ORTHO05D001585 9.7e-06 55.5 253 23.7
Gorai.008G011600 Gossypium raimondii HOM05D001610 ORTHO05D001585 9.7e-06 55.5 253 23.7


User provided reference genes

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