Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.7e-57 224.2 104 100.0
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.5e-18 96.3 58 72.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 2.0e-15 85.9 57 64.9
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.6e-15 85.5 46 78.3
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 7.7e-15 84.0 81 51.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 7.7e-15 84.0 46 76.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 1.7e-14 82.8 90 44.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 1.7e-14 82.8 79 49.4
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 2.2e-14 82.4 46 73.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 2.2e-14 82.4 46 73.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 2.9e-14 82.0 79 50.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 2.9e-14 82.0 46 73.9
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 2.9e-14 82.0 57 61.4
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.9e-14 82.0 46 76.1
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 2.9e-14 82.0 46 76.1
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 3.8e-14 81.6 46 71.7
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 3.8e-14 81.6 57 61.4
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 5.0e-14 81.3 57 61.4
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 5.0e-14 81.3 57 59.6
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 5.0e-14 81.3 57 59.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.0e-14 81.3 46 73.9
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 5.0e-14 81.3 79 48.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 6.5e-14 80.9 57 59.6
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 6.5e-14 80.9 46 73.9
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 6.5e-14 80.9 44 77.3
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 6.5e-14 80.9 46 73.9
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 6.5e-14 80.9 46 73.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 8.5e-14 80.5 57 56.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 1.1e-13 80.1 57 59.6
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.1e-13 80.1 57 57.9
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.1e-13 80.1 44 77.3
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.1e-13 80.1 46 76.1
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 1.4e-13 79.7 46 69.6
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.4e-13 79.7 57 59.6
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 1.4e-13 79.7 46 69.6
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 1.9e-13 79.3 46 69.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 1.9e-13 79.3 46 71.7
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 2.5e-13 79.0 57 59.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 2.5e-13 79.0 46 71.7
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 2.5e-13 79.0 79 46.8
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 2.5e-13 79.0 57 59.6
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 3.2e-13 78.6 57 57.9
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 3.2e-13 78.6 57 57.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 3.2e-13 78.6 57 59.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 3.2e-13 78.6 46 71.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 4.2e-13 78.2 57 57.9
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 4.2e-13 78.2 46 69.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.2e-13 78.2 57 59.6
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 4.2e-13 78.2 46 69.6
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 4.2e-13 78.2 46 71.7
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 4.2e-13 78.2 57 57.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 5.5e-13 77.8 46 67.4
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 7.2e-13 77.4 57 57.9
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 7.2e-13 77.4 57 57.9
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 7.2e-13 77.4 57 57.9
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 7.2e-13 77.4 57 59.6
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 7.2e-13 77.4 46 69.6
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 7.2e-13 77.4 57 57.9
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 7.2e-13 77.4 46 69.6
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 7.2e-13 77.4 46 69.6
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 9.4e-13 77.0 57 57.9
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 9.4e-13 77.0 46 67.4
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 1.2e-12 76.6 47 68.1
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 1.2e-12 76.6 57 57.9
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 1.2e-12 76.6 46 69.6
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 1.2e-12 76.6 46 67.4
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 1.2e-12 76.6 46 69.6
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 1.6e-12 76.3 57 56.1
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 1.6e-12 76.3 46 69.6
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 1.6e-12 76.3 46 67.4
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.6e-12 76.3 46 67.4
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 1.6e-12 76.3 79 46.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 1.6e-12 76.3 57 57.9
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 1.6e-12 76.3 46 65.2
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 1.6e-12 76.3 57 57.9
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 2.1e-12 75.9 57 56.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 2.1e-12 75.9 46 69.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 2.1e-12 75.9 46 67.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 2.1e-12 75.9 46 67.4
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 2.1e-12 75.9 91 45.1
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 2.1e-12 75.9 57 57.9
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 2.1e-12 75.9 57 56.1
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 2.1e-12 75.9 46 67.4
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 2.7e-12 75.5 57 57.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 2.7e-12 75.5 46 67.4
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 2.7e-12 75.5 46 67.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 2.7e-12 75.5 57 56.1
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 2.7e-12 75.5 57 57.9
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 3.6e-12 75.1 57 56.1
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 3.6e-12 75.1 46 69.6
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 4.6e-12 74.7 46 65.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 4.6e-12 74.7 46 65.2
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 4.6e-12 74.7 57 57.9
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 4.6e-12 74.7 46 67.4
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 4.6e-12 74.7 46 67.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 6.1e-12 74.3 105 36.2
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 6.1e-12 74.3 105 36.2
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 6.1e-12 74.3 105 36.2
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 6.1e-12 74.3 79 46.8
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 6.1e-12 74.3 57 56.1
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 6.1e-12 74.3 44 70.5
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 1.0e-11 73.6 57 52.6
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 1.0e-11 73.6 46 65.2
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 1.0e-11 73.6 46 63.0
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 1.0e-11 73.6 44 70.5
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 1.4e-11 73.2 46 65.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 1.8e-11 72.8 57 54.4
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 1.8e-11 72.8 99 39.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 2.3e-11 72.4 46 63.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 2.3e-11 72.4 44 70.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 3.0e-11 72.0 57 54.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 3.0e-11 72.0 57 54.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 3.0e-11 72.0 57 54.4
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 3.0e-11 72.0 57 54.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 3.0e-11 72.0 46 65.2
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 3.0e-11 72.0 46 65.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 5.1e-11 71.2 44 68.2
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 5.1e-11 71.2 46 63.0
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 6.7e-11 70.9 46 63.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 8.8e-11 70.5 57 52.6
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 8.8e-11 70.5 46 63.0
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 2.0e-10 69.3 46 60.9
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 3.3e-10 68.6 42 66.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.7e-10 67.8 42 69.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 5.7e-10 67.8 57 49.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.3e-09 66.6 42 69.0
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 2.8e-09 65.5 46 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 9.1e-08 60.5 50 52.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 5.9e-07 57.8 42 54.8
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.7e-07 57.4 42 57.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.5e-06 54.3 42 52.4


User provided reference genes

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