Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19995 Selenicereus undatus HOM05D000324 ORTHO05D380404 7.4e-39 163.3 78 100.0
Hund06210 Selenicereus undatus HOM05D000324 ORTHO05D001014 1.5e-18 95.9 102 52.0
Haze_02449 Corylus avellana HOM05D000324 ORTHO05D010724 2.7e-12 75.1 52 55.8
Haze_02442 Corylus avellana HOM05D000324 ORTHO05D010724 3.9e-11 71.2 53 50.9
AUR62016673 Chenopodium quinoa HOM05D000324 ORTHO05D001014 6.6e-11 70.5 42 69.0
Sc08g0000260 Simmondsia chinensis HOM05D000324 ORTHO05D001014 2.5e-10 68.6 42 69.0
EL10Ac9g21780 Beta vulgaris HOM05D000324 ORTHO05D001014 5.6e-10 67.4 42 66.7
CSS0005243 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 5.6e-10 67.4 42 66.7
Rhsim11G0171600 Rhododendron simsii HOM05D000324 ORTHO05D001014 1.2e-09 66.2 42 66.7
AUR62011387 Chenopodium quinoa HOM05D000324 ORTHO05D001014 1.6e-09 65.9 42 64.3
Glyma.07G161900 Glycine max HOM05D000324 ORTHO05D001014 2.1e-09 65.5 42 66.7
Actinidia00483 Actinidia chinensis HOM05D000324 ORTHO05D001014 2.8e-09 65.1 42 64.3
CAN.G322.98 Capsicum annuum HOM05D000324 ORTHO05D001014 3.6e-09 64.7 42 61.9
COL.COLO4_17786 Corchorus olitorius HOM05D000324 ORTHO05D001014 4.7e-09 64.3 42 64.3
Glyma.07G116200 Glycine max HOM05D000324 ORTHO05D010724 4.7e-09 64.3 42 64.3
PGSC0003DMG400025174 Solanum tuberosum HOM05D000324 ORTHO05D001014 4.7e-09 64.3 42 61.9
Ca_12484_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 6.2e-09 63.9 55 54.5
Ca_12485_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 6.2e-09 63.9 55 54.5
Aqoxy6G00962 Aquilegia oxysepala HOM05D000324 ORTHO05D001014 8.0e-09 63.5 55 50.9
Manes.17G097400 Manihot esculenta HOM05D000324 ORTHO05D001014 8.0e-09 63.5 42 66.7
Nitab4.5_0003281g0070 Nicotiana tabacum HOM05D000324 ORTHO05D001014 8.0e-09 63.5 42 61.9
Solyc01g109180.4 Solanum lycopersicum HOM05D000324 ORTHO05D001014 8.0e-09 63.5 42 59.5
Sopen01g051380 Solanum pennellii HOM05D000324 ORTHO05D001014 8.0e-09 63.5 42 61.9
Glyma.12G047400 Glycine max HOM05D000324 ORTHO05D001014 1.0e-08 63.2 42 61.9
Lj9C365T17 Lonicera japonica HOM05D000324 ORTHO05D001014 1.0e-08 63.2 42 59.5
Thecc.02G029700 Theobroma cacao HOM05D000324 ORTHO05D001014 1.0e-08 63.2 55 52.7
vmacro02154 Vaccinium macrocarpon HOM05D000324 ORTHO05D001014 1.4e-08 62.8 42 61.9
Glyma.20G007900 Glycine max HOM05D000324 ORTHO05D001014 1.8e-08 62.4 42 61.9
Prupe.8G108900 Prunus persica HOM05D000324 ORTHO05D010724 1.8e-08 62.4 42 64.3
Duzib052G0023 Durio zibethinus HOM05D000324 ORTHO05D001014 2.3e-08 62.0 42 61.9
Nitab4.5_0003816g0080 Nicotiana tabacum HOM05D000324 ORTHO05D001014 2.3e-08 62.0 42 59.5
FvH4_2g07450 Fragaria vesca HOM05D000324 ORTHO05D001014 3.1e-08 61.6 42 64.3
FAN20G0918 Fragaria x ananassa HOM05D000324 ORTHO05D001014 3.1e-08 61.6 42 64.3
FAN27G1953 Fragaria x ananassa HOM05D000324 ORTHO05D001014 3.1e-08 61.6 42 64.3
Ca_20829_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 4.0e-08 61.2 96 34.4
MELO3C021941.2 Cucumis melo HOM05D000324 ORTHO05D001014 4.0e-08 61.2 42 59.5
Lalb_Chr01g0002911 Lupinus albus HOM05D000324 ORTHO05D001014 4.0e-08 61.2 42 59.5
CsaV3_2G014350 Cucumis sativus L. HOM05D000324 ORTHO05D001014 5.2e-08 60.8 41 61.0
FAN15G1460 Fragaria x ananassa HOM05D000324 ORTHO05D001014 5.2e-08 60.8 42 64.3
FAN15G1777 Fragaria x ananassa HOM05D000324 ORTHO05D001014 5.2e-08 60.8 42 64.3
Psat6g097200 Pisum sativum HOM05D000324 ORTHO05D001014 5.2e-08 60.8 40 65.0
Dinv42103 Davidia involucrata HOM05D000324 ORTHO05D001014 6.8e-08 60.5 41 58.5
PSO675G0699 Papaver somniferum HOM05D000324 ORTHO05D001014 6.8e-08 60.5 55 52.7
Phvul.003G010600 Phaseolus vulgaris HOM05D000324 ORTHO05D001014 6.8e-08 60.5 42 59.5
TAR381G0521 Trochodendron aralioides HOM05D000324 ORTHO05D001014 6.8e-08 60.5 42 59.5
Gohir.D01G172600 Gossypium hirsutum HOM05D000324 ORTHO05D001014 8.9e-08 60.1 41 61.0
Gorai.002G214200 Gossypium raimondii HOM05D000324 ORTHO05D001014 8.9e-08 60.1 41 61.0
PSO541G1571 Papaver somniferum HOM05D000324 ORTHO05D001014 1.2e-07 59.7 55 52.7
GSVIVG01031892001 Vitis vinifera HOM05D000324 ORTHO05D001014 1.2e-07 59.7 42 57.1
arahy.Tifrunner.gnm1.ann1.4N44WU Arachis hypogaea HOM05D000324 ORTHO05D001014 1.5e-07 59.3 42 59.5
arahy.Tifrunner.gnm1.ann1.H4N6W2 Arachis hypogaea HOM05D000324 ORTHO05D001014 1.5e-07 59.3 42 59.5
Lj3g0003610 Lotus japonicus HOM05D000324 ORTHO05D001014 1.5e-07 59.3 42 59.5
MBI16_g20826_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D001014 1.5e-07 59.3 41 58.5
TPR.G29897 Trifolium pratense HOM05D000324 ORTHO05D001014 1.5e-07 59.3 42 57.1
CAN.G322.95 Capsicum annuum HOM05D000324 ORTHO05D001014 2.0e-07 58.9 42 59.5
Haze_02440 Corylus avellana HOM05D000324 ORTHO05D001014 2.0e-07 58.9 42 57.1
VMungo1127G1827 Vigna mungo HOM05D000324 ORTHO05D001014 2.0e-07 58.9 42 59.5
arahy.Tifrunner.gnm1.ann1.HE7HHG Arachis hypogaea HOM05D000324 ORTHO05D001014 2.6e-07 58.5 43 60.5
arahy.Tifrunner.gnm1.ann1.ML01RA Arachis hypogaea HOM05D000324 ORTHO05D001014 2.6e-07 58.5 43 60.5
Haze_02446 Corylus avellana HOM05D000324 ORTHO05D001014 2.6e-07 58.5 39 61.5
Glyma.11G122500 Glycine max HOM05D000324 ORTHO05D001014 2.6e-07 58.5 42 59.5
Medtr4g068670 Medicago truncatula HOM05D000324 ORTHO05D001014 2.6e-07 58.5 42 59.5
Oeu007233.1 Olea europaea HOM05D000324 ORTHO05D001014 2.6e-07 58.5 39 61.5
TPR.G18595 Trifolium pratense HOM05D000324 ORTHO05D001014 2.6e-07 58.5 40 62.5
CAN.G322.96 Capsicum annuum HOM05D000324 ORTHO05D010724 3.4e-07 58.2 42 57.1
Lj2g0021043 Lotus japonicus HOM05D000324 ORTHO05D001014 3.4e-07 58.2 42 59.5
Lj2g0027114 Lotus japonicus HOM05D000324 ORTHO05D001014 3.4e-07 58.2 42 59.5
SGA_v2.0_scaffold55G19819 Striga asiatica HOM05D000324 ORTHO05D001014 3.4e-07 58.2 40 57.5
arahy.Tifrunner.gnm1.ann1.VN71XR Arachis hypogaea HOM05D000324 ORTHO05D010724 4.4e-07 57.8 42 59.5
Migut.B00284 Erythranthe guttata HOM05D000324 ORTHO05D001014 4.4e-07 57.8 41 56.1
Gohir.A01G181500 Gossypium hirsutum HOM05D000324 ORTHO05D001014 4.4e-07 57.8 41 58.5
Potri.009G109900 Populus trichocarpa HOM05D000324 ORTHO05D001014 4.4e-07 57.8 39 61.5
QL11p039566 Quercus lobata HOM05D000324 ORTHO05D001014 4.4e-07 57.8 42 57.1
RcHm_v2.0_Chr6g0261761 Rosa chinensis HOM05D000324 ORTHO05D010724 4.4e-07 57.8 44 56.8
VMungo1215G0426 Vigna mungo HOM05D000324 ORTHO05D001014 4.4e-07 57.8 40 60.0
MSTRG.5381 Avicennia marina HOM05D000324 ORTHO05D010724 5.8e-07 57.4 42 54.8
Cc02_g18100 Coffea canephora HOM05D000324 ORTHO05D001014 5.8e-07 57.4 42 54.8
Peaxi162Scf00016g01142 Petunia axillaris HOM05D000324 ORTHO05D001014 5.8e-07 57.4 42 54.8
Phvul.011G049400 Phaseolus vulgaris HOM05D000324 ORTHO05D001014 5.8e-07 57.4 42 57.1
RcHm_v2.0_Chr6g0261291 Rosa chinensis HOM05D000324 ORTHO05D010724 5.8e-07 57.4 44 56.8
RcHm_v2.0_Chr6g0261981 Rosa chinensis HOM05D000324 ORTHO05D001014 5.8e-07 57.4 42 59.5
Sabra09G0083900 Salix brachista HOM05D000324 ORTHO05D001014 5.8e-07 57.4 39 61.5
ClCG09G017750 Citrullus lanatus HOM05D000324 ORTHO05D001014 7.5e-07 57.0 41 56.1
Lsat_1_v5_gn_5_119140 Lactuca sativa HOM05D000324 ORTHO05D001014 7.5e-07 57.0 42 57.1
Phvul.008G115400 Phaseolus vulgaris HOM05D000324 ORTHO05D010724 7.5e-07 57.0 42 54.8
Cfa004961 Carpinus fangiana HOM05D000324 ORTHO05D001014 9.8e-07 56.6 42 54.8
Medtr1g034360 Medicago truncatula HOM05D000324 ORTHO05D001014 9.8e-07 56.6 40 57.5
Sed0000695 Sechium edule HOM05D000324 ORTHO05D001014 9.8e-07 56.6 42 54.8
CiPaw.06G138800 Carya illinoinensis HOM05D000324 ORTHO05D001014 1.3e-06 56.2 42 52.4
DCAR_022082 Daucus carota HOM05D000324 ORTHO05D001014 1.7e-06 55.8 42 54.8
MD10G1085400 Malus domestica HOM05D000324 ORTHO05D001014 1.7e-06 55.8 41 58.5
Nn5g29440 Nelumbo nucifera HOM05D000324 ORTHO05D001014 1.7e-06 55.8 42 54.8
RcHm_v2.0_Chr6g0261101 Rosa chinensis HOM05D000324 ORTHO05D014082 1.7e-06 55.8 40 60.0
TWI31G0169 Tripterygium wilfordii HOM05D000324 ORTHO05D001014 1.7e-06 55.8 42 54.8
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 2.2e-06 55.5 42 54.8
Eucgr.G00490 Eucalyptus grandis HOM05D000324 ORTHO05D001014 2.9e-06 55.1 42 54.8
Prupe.8G108400 Prunus persica HOM05D000324 ORTHO05D001014 2.9e-06 55.1 42 57.1
RcHm_v2.0_Chr6g0261431 Rosa chinensis HOM05D000324 ORTHO05D010724 2.9e-06 55.1 42 57.1
RcHm_v2.0_Chr6g0261651 Rosa chinensis HOM05D000324 ORTHO05D010724 2.9e-06 55.1 40 60.0
CDE07G1354 Ceratophyllum demersum HOM05D003114 ORTHO05D003519 3.7e-06 54.7 40 52.5
MD05G1070800 Malus domestica HOM05D000324 ORTHO05D001014 3.7e-06 54.7 39 61.5
Atru.chr5.2906 Acer truncatum HOM05D000324 ORTHO05D001014 4.9e-06 54.3 56 48.2
Ciclev10027967m.g Citrus clementina HOM05D000324 ORTHO05D001014 4.9e-06 54.3 43 58.1
Os11g0558300 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 4.9e-06 54.3 40 52.5
QL09p044231 Quercus lobata HOM05D000324 ORTHO05D010724 6.4e-06 53.9 42 52.4
Sp1g36280 Schrenkiella parvula HOM05D000324 ORTHO05D001014 6.4e-06 53.9 44 52.3
SEGI_23769 Sequoiadendron giganteum HOM05D000324 ORTHO05D010724 6.4e-06 53.9 41 51.2
unitig_21.g20767 Utricularia gibba HOM05D000324 ORTHO05D001014 6.4e-06 53.9 41 51.2
Prupe.8G108600 Prunus persica HOM05D000324 ORTHO05D010724 8.3e-06 53.5 35 65.7


User provided reference genes

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