Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 0.0e+00 1214.9 623 100.0
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 6.5e-194 681.4 590 63.7
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.7e-191 671.4 628 60.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 8.2e-181 637.9 602 59.6
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.4e-156 555.4 624 54.2
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.6e-155 553.9 578 55.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 7.8e-139 498.4 515 54.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 8.6e-138 495.0 604 48.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 6.0e-131 472.2 585 49.9
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 2.8e-128 463.4 585 48.9
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.4e-127 460.3 607 47.6
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.4e-127 460.3 581 49.1
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.1e-127 459.9 525 52.6
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.5e-126 457.6 600 47.7
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.4e-126 456.4 561 50.1
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.8e-126 455.7 563 49.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.7e-125 454.1 618 46.0
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.4e-125 452.2 564 49.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.4e-124 450.3 570 48.9
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 7.1e-124 448.7 567 50.3
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.6e-123 447.6 580 48.3
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 2.1e-123 447.2 555 48.3
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 3.9e-122 443.0 601 46.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.1e-121 441.4 588 48.0
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.9e-121 440.7 588 48.1
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 3.3e-121 439.9 518 51.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 8.1e-120 435.3 536 50.9
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 8.1e-120 435.3 536 50.9
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 8.1e-120 435.3 588 47.8
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 6.9e-119 432.2 612 45.1
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.5e-118 431.0 605 44.3
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 5.8e-118 429.1 528 48.9
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 9.9e-118 428.3 588 45.6
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.2e-116 422.9 601 44.3
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.2e-115 421.4 537 48.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-115 421.4 614 46.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.1e-115 420.6 590 44.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.0e-115 419.1 636 43.4
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.3e-114 417.9 576 46.4
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.3e-114 417.2 442 53.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 8.7e-114 415.2 557 45.8
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 7.4e-113 412.1 557 45.2
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 7.4e-113 412.1 554 46.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.1e-112 410.6 555 45.4
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.6e-112 409.8 608 43.6
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.2e-112 409.1 426 52.8
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.8e-111 407.5 633 42.0
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 5.3e-111 406.0 511 47.9
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.4e-110 403.3 559 44.9
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 4.5e-110 402.9 434 52.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 9.9e-110 401.7 601 46.1
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 9.9e-110 401.7 569 44.6
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.2e-109 400.6 595 42.9
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 8.4e-109 398.7 428 53.7
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.4e-108 397.1 600 45.0
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.4e-108 397.1 520 46.7
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 4.2e-108 396.4 595 42.2
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 6.0e-107 392.5 514 47.1
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.9e-106 389.8 424 52.6
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 8.7e-106 388.7 533 46.0
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 8.7e-106 388.7 533 46.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 8.7e-106 388.7 561 45.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 5.6e-105 386.0 523 44.7
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 7.4e-105 385.6 502 46.8
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.7e-104 383.3 406 52.5
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 6.9e-103 379.0 630 40.8
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 9.0e-103 378.6 572 42.7
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.5e-102 377.9 544 42.1
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.5e-102 376.3 572 42.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.0e-101 375.2 424 49.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.7e-101 374.4 519 43.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.7e-101 374.4 520 42.9
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.9e-101 372.9 558 41.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 6.5e-101 372.5 492 47.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.1e-99 367.5 606 43.7
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 4.6e-99 366.3 513 45.8
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.0e-98 365.2 606 40.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.6e-96 357.8 525 42.3
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-94 350.9 582 41.9
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.7e-93 347.8 489 42.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 3.8e-93 346.7 489 42.1
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.9e-92 344.4 556 39.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.5e-92 344.0 584 40.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-92 344.0 567 41.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 4.2e-92 343.2 567 39.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.1e-91 340.9 452 45.6
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 5.1e-90 336.3 515 41.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 5.1e-90 336.3 557 41.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.1e-89 335.1 459 43.8
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.5e-89 334.0 576 38.7
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.5e-89 334.0 509 43.2
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-89 334.0 561 40.6
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.6e-88 331.3 405 48.9
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.1e-87 328.6 490 41.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-86 325.1 521 40.5
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-86 325.1 521 40.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.2e-86 325.1 521 40.1
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.0e-86 324.3 521 40.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 7.7e-86 322.4 521 40.3
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.3e-85 321.6 513 39.8
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.2e-83 315.1 511 41.9
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.5e-81 308.1 288 55.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 6.9e-79 299.3 547 38.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.0e-77 295.4 567 37.4
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.9e-76 291.2 514 38.1
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.1e-75 286.2 232 57.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 7.0e-71 272.7 559 36.0
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 4.5e-70 270.0 461 44.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 4.2e-68 263.5 509 35.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.5e-62 243.4 342 47.1
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.8e-61 240.4 559 34.3
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.5e-60 237.7 356 44.9
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.4e-57 227.3 292 51.0
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.4e-55 221.9 415 39.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-54 218.0 364 40.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.0e-53 213.4 267 45.3
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.2e-52 210.7 169 60.4
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.2e-43 182.2 247 41.3
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.8e-42 178.3 288 38.2
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 2.3e-42 177.9 381 33.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 4.0e-42 177.2 408 35.8
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.4e-39 167.9 388 34.8
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.4e-34 152.1 309 33.7
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.4e-33 147.5 139 54.7
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.4e-32 143.3 309 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 8.3e-32 142.9 319 34.2
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 4.3e-28 130.6 213 37.6
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 9.5e-28 129.4 130 51.5
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.1e-27 128.3 228 34.6
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.8e-26 125.2 288 31.2
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-24 118.6 129 51.2
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.0e-22 110.2 167 44.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-21 109.0 196 37.2
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-21 108.2 89 56.2
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-21 108.2 89 56.2
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.7e-19 100.5 259 29.7
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-16 90.5 242 29.3
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 3.0e-13 81.3 311 26.4
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-13 81.3 311 26.4
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 3.0e-13 81.3 311 26.4
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 3.6e-11 74.3 293 25.9


User provided reference genes

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