Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 1.3e-232 809.3 394 100.0
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 3.4e-188 661.8 423 75.7
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 8.3e-187 657.1 413 76.8
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 8.4e-163 577.4 425 65.6
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 1.9e-162 576.2 432 65.0
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.9e-162 576.2 419 66.6
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 3.2e-162 575.5 424 67.7
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 2.1e-161 572.8 419 65.9
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 2.3e-160 569.3 419 65.6
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 1.5e-159 566.6 419 65.4
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 5.6e-159 564.7 423 66.7
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 2.8e-158 562.4 429 63.6
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 2.0e-156 556.2 444 64.4
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 4.4e-156 555.1 448 62.1
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 2.2e-155 552.7 410 64.6
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 4.9e-155 551.6 429 63.6
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 1.1e-154 550.4 429 64.6
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 1.4e-154 550.1 469 59.9
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 2.4e-154 549.3 419 63.5
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 1.2e-153 547.0 399 70.4
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.6e-153 546.6 428 64.7
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 2.7e-153 545.8 409 64.5
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 1.3e-152 543.5 430 63.0
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 3.0e-152 542.3 432 62.3
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 6.6e-152 541.2 430 62.8
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 3.3e-151 538.9 426 63.6
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 4.3e-151 538.5 430 61.9
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 1.6e-150 536.6 436 60.8
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 1.8e-149 533.1 429 62.9
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 1.8e-149 533.1 429 62.9
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 2.4e-149 532.7 432 61.6
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 6.9e-149 531.2 422 62.1
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 9.0e-149 530.8 479 56.4
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 4.5e-148 528.5 419 61.6
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 9.9e-148 527.3 418 61.7
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 1.7e-147 526.6 433 60.5
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 1.4e-146 523.5 430 60.0
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 1.9e-146 523.1 458 57.2
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 9.3e-146 520.8 404 63.6
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 2.1e-145 519.6 445 59.3
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 2.1e-145 519.6 435 58.9
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 2.7e-145 519.2 397 67.3
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 1.3e-144 516.9 422 60.7
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 1.3e-144 516.9 435 59.3
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 1.3e-144 516.9 435 59.3
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 1.8e-144 516.5 428 60.5
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 3.0e-144 515.8 428 60.3
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 3.0e-144 515.8 525 53.1
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 3.9e-144 515.4 428 59.3
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 1.1e-143 513.8 435 58.6
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.1e-143 513.8 419 61.3
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 1.1e-143 513.8 384 66.9
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 4.3e-143 511.9 435 58.9
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 5.6e-143 511.5 423 60.8
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 4.0e-141 505.4 460 57.6
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 6.9e-141 504.6 422 59.5
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 9.0e-141 504.2 425 59.3
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.5e-140 503.4 523 51.8
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 2.6e-140 502.7 503 51.5
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 3.8e-139 498.8 422 59.0
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.4e-139 498.0 422 58.8
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 4.2e-138 495.4 429 58.3
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 4.2e-138 495.4 436 56.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 1.2e-137 493.8 429 58.3
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 1.6e-137 493.4 421 58.4
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 6.0e-137 491.5 429 58.3
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 7.9e-137 491.1 429 57.8
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 7.9e-137 491.1 429 59.7
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 1.0e-136 490.7 425 59.1
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 2.5e-135 486.1 429 57.6
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 4.0e-133 478.8 486 53.7
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 1.5e-132 476.9 428 54.9
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 3.4e-132 475.7 394 60.9
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 5.8e-132 474.9 426 54.2
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.3e-131 473.8 440 57.0
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 1.7e-131 473.4 426 53.5
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 2.9e-131 472.6 393 60.1
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 4.9e-131 471.9 446 54.5
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 2.5e-130 469.5 419 58.0
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 1.4e-125 453.8 332 66.0
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 1.2e-124 450.7 433 54.3
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 2.6e-124 449.5 355 63.9
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 1.3e-120 437.2 475 49.3
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 4.2e-106 389.0 352 57.1
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 7.2e-106 388.3 424 51.7
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 9.7e-103 377.9 366 54.4
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 1.9e-98 363.6 461 43.2
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.3e-91 340.9 241 66.8
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 8.0e-89 331.6 442 42.3
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.0e-88 331.3 442 42.1
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 2.3e-88 330.1 301 57.1
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.8e-85 320.5 326 52.1
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 4.1e-85 319.3 443 37.7
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 2.7e-84 316.6 181 81.8
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 1.1e-82 311.2 182 80.8
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 1.9e-82 310.5 184 80.4
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.6e-81 306.2 181 76.8
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 2.6e-79 300.1 179 77.1
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 7.0e-77 292.0 262 56.1
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 5.0e-75 285.8 167 79.0
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 8.3e-70 268.5 229 57.6
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 9.2e-69 265.0 237 56.1
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 3.0e-67 260.0 201 61.2
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 8.6e-67 258.5 152 79.6
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.2e-65 254.6 271 52.8
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.1e-64 251.5 244 52.9
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-63 247.3 203 60.6
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.4e-63 246.5 243 49.8
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 3.7e-62 243.0 251 51.8
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 3.5e-60 236.5 182 58.8
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.5e-60 236.5 150 71.3
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 1.5e-55 221.1 162 63.6
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.0e-55 220.7 215 52.1
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 7.8e-52 208.8 181 56.4
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 6.2e-49 199.1 303 38.9
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 1.4e-45 188.0 117 76.1
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 5.1e-43 179.5 192 50.0
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 3.0e-35 153.7 97 75.3
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 6.2e-33 146.0 230 40.9
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 5.4e-29 132.9 229 37.6
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 1.3e-27 128.3 274 28.8
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.0e-27 127.1 78 73.1
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.1e-24 117.1 70 72.9
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.0e-24 116.7 70 71.4
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 2.0e-15 87.8 58 70.7
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.2e-14 84.3 54 66.7
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 6.5e-14 82.8 52 69.2
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 7.7e-07 59.3 43 58.1


User provided reference genes

Program Settings