Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 0.0e+00 1079.7 553 100.0
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.7e-236 821.2 571 75.7
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.3e-233 810.8 550 75.8
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.1e-232 808.5 550 76.2
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 5.0e-230 801.2 553 75.8
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 7.0e-216 754.2 452 82.7
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.0e-214 750.4 515 76.1
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 1.7e-214 749.6 446 83.4
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 4.7e-212 741.5 515 75.1
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 8.0e-212 740.7 461 80.9
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.8e-211 739.6 469 79.1
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 4.0e-211 738.4 447 81.2
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 4.0e-211 738.4 446 82.3
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.0e-211 738.4 471 78.6
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 6.8e-211 737.6 518 73.4
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.4e-210 734.9 440 83.2
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 7.5e-210 734.2 439 81.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 9.8e-210 733.8 442 82.4
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.3e-209 733.4 440 83.4
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.2e-209 732.6 453 79.9
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.2e-209 732.6 458 80.1
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.4e-208 729.9 515 72.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.4e-208 729.9 528 70.8
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.4e-208 729.9 526 72.4
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.4e-208 729.9 470 77.2
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.2e-207 726.9 470 77.2
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 2.0e-207 726.1 470 77.2
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.7e-207 725.7 473 78.0
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.7e-207 725.7 478 77.8
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.5e-207 725.3 478 77.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 3.5e-207 725.3 502 75.1
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.5e-207 724.9 501 75.0
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 4.5e-207 724.9 493 74.6
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 4.5e-207 724.9 440 80.7
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 4.5e-207 724.9 475 77.3
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 7.8e-207 724.2 520 72.7
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 7.8e-207 724.2 465 78.1
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.0e-206 723.8 438 81.3
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.0e-206 723.8 443 80.1
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.7e-206 723.0 434 82.5
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 2.3e-206 722.6 438 82.4
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 3.9e-206 721.8 455 79.3
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.1e-205 720.3 444 80.2
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.5e-205 719.2 533 71.7
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.5e-205 719.2 441 80.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.6e-204 716.5 519 72.8
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.6e-204 716.5 539 70.5
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 8.0e-204 714.1 493 73.4
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 8.0e-204 714.1 474 75.3
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.8e-203 713.0 438 80.8
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 2.3e-203 712.6 461 77.4
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.1e-203 712.2 430 81.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.1e-203 712.2 436 81.0
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 4.0e-203 711.8 536 70.0
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 5.2e-203 711.4 438 79.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.2e-202 710.3 447 79.0
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.0e-202 709.5 472 76.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.6e-202 709.1 453 78.4
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.4e-202 708.8 493 72.8
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 3.4e-202 708.8 438 81.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.4e-202 708.8 472 75.6
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.8e-202 708.0 523 70.6
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 7.5e-202 707.6 441 79.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 6.4e-201 704.5 487 74.1
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.4e-200 703.4 434 80.6
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.4e-200 702.6 434 80.4
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 5.4e-200 701.4 426 80.8
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 7.0e-200 701.0 426 81.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.0e-199 699.5 428 80.4
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.7e-199 699.1 430 80.2
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 6.0e-199 698.0 511 70.5
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 7.8e-199 697.6 445 78.0
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 7.8e-199 697.6 426 81.0
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.7e-198 696.4 430 80.2
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.3e-198 696.0 458 76.2
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 3.0e-198 695.7 422 82.0
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 8.6e-198 694.1 437 78.5
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 8.6e-198 694.1 427 81.7
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-197 693.7 427 79.2
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-197 693.7 427 79.2
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.5e-197 693.3 422 81.3
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.5e-197 693.3 422 81.5
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 1.9e-197 693.0 450 76.7
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-197 693.0 442 77.8
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.9e-197 693.0 436 79.1
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 2.5e-197 692.6 491 71.3
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 4.3e-197 691.8 522 70.5
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.6e-196 689.9 422 80.1
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.8e-196 689.1 422 80.8
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 3.6e-196 688.7 471 74.3
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.8e-195 686.4 422 80.6
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.8e-195 686.4 422 80.6
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 5.2e-195 684.9 444 76.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 8.9e-195 684.1 422 80.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.2e-194 683.7 438 78.1
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 2.0e-194 682.9 485 72.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 4.4e-194 681.8 427 79.4
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 5.8e-194 681.4 438 77.9
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 7.5e-194 681.0 552 66.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 7.5e-194 681.0 422 79.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.3e-193 680.2 426 78.4
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.1e-192 677.2 422 78.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.4e-192 676.8 529 66.7
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 9.2e-192 674.1 533 66.4
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.2e-191 673.7 446 75.8
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.7e-191 672.5 446 75.8
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 4.6e-191 671.8 449 76.6
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 3.9e-190 668.7 428 75.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.6e-190 667.9 425 76.5
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.7e-188 661.8 436 76.6
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.2e-183 647.1 474 70.7
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.6e-182 641.3 399 80.7
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.5e-181 640.2 406 80.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-180 637.1 432 72.5
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 3.1e-179 632.5 426 71.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 5.8e-178 628.2 511 63.2
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.2e-177 626.3 479 66.2
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 2.5e-173 612.8 448 67.9
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.0e-166 590.9 369 79.1
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 5.5e-152 542.0 324 82.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.7e-149 531.9 307 86.3
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.5e-146 523.9 434 61.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 4.2e-144 515.8 315 81.3
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-143 514.2 297 85.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.3e-139 498.8 461 56.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 6.5e-137 491.9 429 59.4
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 6.5e-137 491.9 317 78.2
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.1e-135 486.9 328 74.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.7e-134 481.9 297 82.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 4.8e-124 449.1 277 80.1
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.4e-123 447.6 297 77.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 6.5e-121 438.7 424 55.0
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-118 431.0 280 78.2
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 7.0e-107 392.1 437 45.8
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 7.0e-107 392.1 227 90.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 2.1e-95 354.0 242 74.4
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.4e-94 351.3 432 44.4
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.9e-78 295.4 175 80.6
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-70 271.2 365 41.9
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.7e-50 204.1 137 72.3
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.0e-49 202.2 177 63.3
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.8e-45 186.4 180 53.3
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 7.6e-45 186.0 124 75.8
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 4.9e-44 183.3 120 72.5
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.1e-38 164.1 131 64.1
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.9e-32 144.8 96 68.8
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.4e-30 137.9 90 77.8
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 7.2e-27 126.3 91 65.9
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 7.2e-27 126.3 91 65.9
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 6.1e-26 123.2 79 72.2
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 7.9e-26 122.9 89 67.4
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.8e-25 121.7 79 72.2
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 6.7e-25 119.8 79 70.9
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 2.5e-24 117.9 76 71.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 4.3e-24 117.1 78 70.5
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.9e-21 106.7 79 65.8
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.9e-21 106.7 79 65.8
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-20 105.5 79 64.6
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.2e-19 100.9 82 68.3
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 5.1e-17 93.6 61 75.4
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 8.8e-17 92.8 258 29.5


User provided reference genes

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