Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.3e-158 561.6 273 100.0
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 2.0e-110 402.9 272 72.1
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 5.7e-110 401.4 256 74.2
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.8e-108 396.4 252 72.6
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 4.1e-108 395.2 257 72.0
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 2.0e-107 392.9 249 75.1
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 3.5e-107 392.1 254 72.0
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 3.5e-107 392.1 252 73.8
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 5.9e-107 391.3 252 73.0
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 7.7e-107 391.0 254 72.0
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 5.0e-106 388.3 252 71.4
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.1e-105 387.1 252 71.0
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.1e-105 387.1 257 72.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.4e-105 386.7 257 72.8
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.9e-105 386.3 257 70.4
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.5e-105 386.0 253 72.7
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 4.2e-105 385.2 251 70.9
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 8.0e-104 380.9 256 73.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.0e-104 380.9 252 70.2
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.8e-103 379.8 252 70.2
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 3.9e-103 378.6 253 71.1
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.7e-103 377.9 252 71.0
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.5e-102 376.7 249 69.5
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.5e-102 376.7 259 68.7
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.0e-102 376.3 252 68.7
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 3.3e-102 375.6 259 68.0
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 3.3e-102 375.6 259 68.0
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.4e-102 375.2 252 69.4
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.4e-102 375.2 252 70.6
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 4.4e-102 375.2 255 71.0
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 5.7e-102 374.8 265 68.7
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 5.7e-102 374.8 254 71.3
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 9.7e-102 374.0 252 70.6
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-101 373.6 258 69.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.3e-101 373.6 252 69.4
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.7e-101 373.2 258 69.8
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.7e-101 373.2 264 69.3
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.2e-101 372.9 257 70.8
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.2e-101 372.9 250 70.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.7e-101 372.1 252 70.6
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.7e-101 372.1 257 68.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 4.8e-101 371.7 263 69.6
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 4.8e-101 371.7 259 68.3
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 4.8e-101 371.7 271 65.7
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 6.3e-101 371.3 253 68.8
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 8.2e-101 370.9 250 68.8
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.4e-100 369.4 257 70.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.4e-100 369.4 252 69.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.4e-100 369.4 255 68.6
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.4e-100 369.4 214 81.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.4e-100 369.4 257 68.5
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.1e-100 368.6 253 68.4
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 7.0e-100 367.9 252 68.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 9.1e-100 367.5 258 66.3
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.2e-99 367.1 258 68.2
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.6e-99 366.7 271 67.2
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.6e-99 366.7 253 67.2
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 3.5e-99 365.5 254 69.3
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.5e-99 365.5 253 67.2
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 4.5e-99 365.2 231 73.6
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-98 363.6 257 69.3
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.3e-98 363.6 250 70.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.8e-98 362.1 250 70.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.8e-98 362.1 261 67.0
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.8e-98 362.1 261 67.0
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.8e-98 362.1 250 69.6
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.8e-98 362.1 250 70.0
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 5.0e-98 361.7 253 66.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 5.0e-98 361.7 276 63.8
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 6.5e-98 361.3 261 67.0
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 1.1e-97 360.5 252 67.1
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.5e-97 360.1 261 66.7
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.5e-97 360.1 261 65.9
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.9e-97 359.8 252 68.3
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.9e-97 359.8 257 68.5
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.5e-97 359.4 254 66.5
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.2e-97 359.0 257 68.1
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 4.2e-97 358.6 249 67.5
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 4.2e-97 358.6 259 64.9
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 5.5e-97 358.2 263 66.5
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 5.5e-97 358.2 249 67.5
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.5e-97 358.2 261 66.7
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 9.4e-97 357.5 249 68.3
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 9.4e-97 357.5 258 68.2
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.2e-96 357.1 259 68.0
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.6e-96 356.7 267 66.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.1e-96 356.3 261 65.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 3.6e-96 355.5 254 65.7
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.6e-96 355.5 250 68.4
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 6.1e-96 354.8 264 65.9
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 8.0e-96 354.4 253 68.8
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.0e-96 354.4 253 65.6
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 8.0e-96 354.4 258 65.1
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.4e-95 353.6 253 65.6
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.0e-95 352.4 252 65.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 3.0e-95 352.4 257 65.8
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 4.0e-95 352.1 256 67.2
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 4.0e-95 352.1 262 64.9
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.7e-94 348.2 294 59.5
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 1.3e-93 347.1 251 67.3
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.1e-92 344.0 312 55.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 4.1e-92 342.0 250 65.2
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 4.1e-92 342.0 250 66.4
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 7.0e-92 341.3 215 72.6
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.0e-91 339.7 252 66.3
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 7.7e-91 337.8 251 65.7
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.9e-90 335.9 260 63.1
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.0e-90 335.1 231 70.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 8.5e-90 334.3 212 73.1
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 4.7e-88 328.6 251 63.7
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.0e-87 327.4 265 63.0
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 3.0e-87 325.9 212 70.8
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.2e-86 323.9 258 60.5
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 4.4e-86 322.0 268 57.8
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.7e-85 318.9 211 67.3
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 6.3e-85 318.2 194 75.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.2e-83 313.9 211 66.8
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.0e-83 313.2 238 63.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.0e-79 300.8 194 72.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.7e-77 293.5 243 60.9
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-77 292.7 194 71.6
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.1e-76 290.8 182 75.8
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.1e-76 290.8 231 60.6
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 4.1e-76 288.9 193 72.0
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.4e-76 288.5 191 68.6
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 9.2e-76 287.7 238 57.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.6e-75 287.0 204 66.2
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 5.9e-75 285.0 249 57.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.1e-72 276.6 169 75.7
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.0e-71 274.2 227 60.4
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.3e-71 273.1 249 55.0
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 3.2e-68 262.7 305 48.5
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-65 253.8 363 43.5
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 9.8e-62 241.1 264 48.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 6.6e-58 228.4 179 60.3
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.7e-53 213.8 233 48.1
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.9e-52 210.3 203 52.2
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.0e-50 204.5 257 47.1
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.0e-50 204.5 179 56.4
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.9e-49 200.3 210 50.5
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.1e-47 194.5 200 52.5
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 3.9e-42 176.0 130 63.8
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 8.7e-42 174.9 111 69.4
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.2e-40 168.7 124 63.7
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-39 167.5 104 78.8
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.1e-39 166.4 248 36.3
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.2e-37 160.2 124 61.3
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 3.0e-34 149.8 323 32.5
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 6.6e-34 148.7 95 68.4
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 7.6e-30 135.2 247 35.2
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.9e-29 132.5 173 42.2
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 6.0e-27 125.6 167 43.7
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.9e-26 122.9 98 59.2
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.3e-25 119.8 147 44.2
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.3e-25 119.4 121 49.6
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 6.0e-19 99.0 75 62.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.5e-17 94.4 119 42.9
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 9.0e-15 85.1 52 75.0
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 9.0e-15 85.1 52 75.0
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.3e-13 81.3 58 58.6
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.7e-13 80.9 85 51.8
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 3.8e-13 79.7 55 65.5
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.8e-10 70.9 107 35.5
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.4e-07 61.2 51 58.8
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.0e-05 55.1 35 71.4


User provided reference genes

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