Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 8.4e-238 826.6 420 100.0
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 9.4e-197 690.3 421 81.7
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.4e-194 681.8 421 80.5
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 4.1e-184 648.3 473 71.2
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 3.5e-183 645.2 417 77.0
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.5e-181 639.8 417 76.0
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 9.5e-181 637.1 418 75.1
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.4e-179 633.3 417 76.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 6.8e-179 630.9 419 76.4
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.2e-178 630.2 417 75.5
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.5e-178 629.8 420 73.8
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.0e-178 629.4 420 74.8
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.5e-178 627.5 416 75.0
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 9.8e-178 627.1 417 75.3
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 9.8e-178 627.1 417 75.1
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.2e-177 625.9 417 74.8
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.9e-177 624.8 416 73.1
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 6.4e-177 624.4 418 74.2
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 8.3e-177 624.0 417 73.4
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.3e-177 624.0 417 73.4
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 1.4e-176 623.2 417 72.9
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 3.2e-176 622.1 416 74.5
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.2e-176 622.1 417 73.1
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 4.1e-176 621.7 417 74.6
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 5.4e-176 621.3 417 73.1
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 5.4e-176 621.3 418 74.2
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.2e-175 620.2 417 71.9
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 2.0e-175 619.4 416 73.8
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.5e-175 618.6 417 72.7
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.5e-175 618.6 415 74.0
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 4.6e-175 618.2 416 74.0
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.9e-175 617.8 417 73.9
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.0e-174 617.1 417 74.3
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 417 71.2
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.3e-174 616.7 417 73.9
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.0e-174 615.5 417 72.9
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 3.0e-174 615.5 416 73.6
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.0e-174 615.5 417 74.1
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 5.0e-174 614.8 414 72.7
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.0e-174 614.8 414 72.9
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 5.0e-174 614.8 417 71.7
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 5.0e-174 614.8 450 69.8
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 6.6e-174 614.4 417 71.2
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 6.6e-174 614.4 417 71.7
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 6.6e-174 614.4 417 74.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.1e-173 613.6 417 73.4
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.1e-173 613.6 417 71.7
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.5e-173 613.2 418 72.2
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.3e-173 612.1 417 71.9
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 4.3e-173 611.7 417 71.2
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 4.3e-173 611.7 416 71.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 5.6e-173 611.3 418 73.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 7.3e-173 610.9 419 71.6
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 9.5e-173 610.5 417 70.5
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 9.5e-173 610.5 418 72.5
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.6e-172 609.8 416 71.9
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.6e-172 609.8 417 73.1
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.6e-172 609.8 418 73.0
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 2.1e-172 609.4 418 72.0
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 2.1e-172 609.4 419 73.0
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 3.6e-172 608.6 418 71.8
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 6.2e-172 607.8 416 72.1
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 6.2e-172 607.8 420 72.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 8.0e-172 607.4 414 72.9
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.0e-171 607.1 418 71.1
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 2.3e-171 605.9 419 72.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 5.2e-171 604.7 417 72.9
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.2e-171 604.7 416 71.6
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 5.2e-171 604.7 419 72.3
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.2e-171 604.7 417 71.9
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.5e-170 603.2 484 65.3
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.0e-170 602.8 417 71.5
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 3.4e-170 602.1 416 71.6
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.4e-170 602.1 419 71.1
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 4.4e-170 601.7 419 71.8
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.5e-170 600.9 418 70.1
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 9.8e-170 600.5 417 72.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.7e-169 599.7 418 70.1
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.9e-169 599.0 415 72.0
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 4.9e-169 598.2 419 71.6
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 8.3e-169 597.4 418 69.4
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.4e-168 596.7 416 70.4
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.9e-168 596.3 414 72.0
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.4e-168 595.9 418 71.3
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 3.2e-168 595.5 416 69.7
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 3.2e-168 595.5 423 71.6
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 4.1e-168 595.1 416 69.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 4.1e-168 595.1 416 69.7
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.4e-168 594.7 417 71.0
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 9.2e-168 594.0 417 71.7
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.2e-167 593.6 415 70.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.6e-167 593.2 416 69.5
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.0e-167 592.8 420 71.0
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.7e-167 592.4 416 69.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 2.7e-167 592.4 418 69.6
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.7e-167 592.4 419 71.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.6e-167 591.7 416 69.2
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.6e-167 591.7 417 70.7
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 7.8e-167 590.9 416 70.9
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 7.8e-167 590.9 417 70.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-166 590.5 417 70.5
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 3.0e-166 589.0 461 65.9
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.9e-166 588.6 417 70.7
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.0e-166 588.2 419 69.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.6e-166 587.4 417 69.8
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.9e-165 586.3 417 69.8
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 4.3e-165 585.1 417 70.3
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.6e-165 584.7 417 69.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 6.8e-163 577.8 402 73.4
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 3.4e-162 575.5 513 61.4
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 8.3e-161 570.9 416 68.5
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 9.2e-160 567.4 415 65.8
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.8e-156 555.8 423 66.2
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 3.1e-155 552.4 408 68.6
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 6.0e-151 538.1 335 79.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 6.0e-151 538.1 334 78.4
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 4.7e-148 528.5 415 61.9
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 6.9e-147 524.6 435 61.4
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 7.1e-144 514.6 354 72.3
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.1e-140 503.1 416 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.6e-138 496.1 415 58.6
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.9e-136 490.0 308 77.6
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.1e-133 480.7 334 70.4
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 3.1e-131 472.6 422 59.2
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 5.3e-131 471.9 415 57.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 7.1e-128 461.5 354 67.2
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 8.2e-124 448.0 423 57.4
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 7.6e-122 441.4 421 56.3
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 7.2e-104 381.7 236 79.2
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.2e-98 364.4 244 73.4
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 6.5e-89 332.0 434 43.8
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 9.8e-77 291.6 397 45.1
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.0e-74 283.9 182 78.0
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.2e-68 263.8 332 45.2
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.5e-64 250.4 239 56.5
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.1e-51 206.5 185 60.0
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 8.3e-44 182.2 113 78.8
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 6.0e-42 176.0 258 45.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.1e-34 151.0 155 52.9
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 7.8e-34 149.1 222 41.4
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 2.5e-32 144.1 90 77.8
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 3.5e-26 123.6 83 72.3
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.3e-25 121.7 84 63.1
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.1e-22 110.5 89 61.8
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 2.6e-21 107.5 86 65.1
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 2.6e-21 107.5 86 65.1
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.2e-20 104.4 83 63.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 4.9e-20 103.2 95 60.0
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.4e-19 100.9 84 60.7
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.2e-18 98.6 76 60.5
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.2e-18 98.6 76 60.5
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 4.6e-18 96.7 163 42.3
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 7.9e-18 95.9 76 59.2
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 4.3e-16 90.1 73 58.9
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.1e-15 87.8 68 61.8
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.6e-13 80.9 59 66.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.4e-11 75.1 68 57.4
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.6e-10 71.6 112 42.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 2.1e-10 71.2 112 41.1
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 2.7e-10 70.9 85 47.1


User provided reference genes

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