Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 1.1e-242 844.0 920 100.0
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.3e-76 292.4 294 55.8
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.3e-70 272.3 191 71.2
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 5.6e-69 266.9 215 65.1
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 1.1e-67 262.7 292 53.8
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 4.0e-67 260.8 241 58.9
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.3e-65 255.8 239 55.2
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.0e-63 246.9 179 68.7
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.3e-62 245.7 179 68.2
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 3.9e-62 244.2 219 59.8
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 8.7e-62 243.0 241 56.4
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 2.4e-59 235.0 155 73.5
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 9.0e-59 233.0 278 50.0
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 2.6e-58 231.5 173 67.6
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 7.6e-58 229.9 192 62.5
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 1.0e-57 229.6 205 58.0
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.9e-57 228.0 228 54.8
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 4.2e-56 224.2 176 60.8
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 9.3e-56 223.0 261 49.8
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.7e-55 221.5 240 50.4
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 3.6e-55 221.1 149 71.8
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 4.6e-55 220.7 230 56.1
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 6.1e-55 220.3 174 63.8
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.3e-54 219.2 157 68.8
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 1.8e-54 218.8 175 62.3
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.8e-54 218.8 154 69.5
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 2.3e-54 218.4 200 58.0
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 6.7e-54 216.9 279 48.0
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 6.7e-54 216.9 236 52.1
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 8.7e-54 216.5 193 58.5
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 8.7e-54 216.5 171 63.7
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.1e-53 216.1 212 57.5
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.5e-53 215.7 148 73.0
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.5e-53 214.9 287 46.3
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 2.5e-53 214.9 289 45.7
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 5.7e-53 213.8 203 58.6
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 9.7e-53 213.0 212 57.1
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 1.3e-52 212.6 203 56.7
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.6e-52 212.2 146 70.5
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.6e-52 212.2 196 57.7
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 2.8e-52 211.5 163 66.3
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 3.7e-52 211.1 161 68.3
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 4.8e-52 210.7 220 55.0
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 6.3e-52 210.3 193 57.5
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 8.2e-52 209.9 235 50.2
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 8.2e-52 209.9 162 64.8
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 8.2e-52 209.9 276 47.8
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 1.4e-51 209.1 200 57.0
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 4.1e-51 207.6 163 63.8
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 5.3e-51 207.2 209 53.1
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 9.0e-51 206.5 171 63.7
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 9.0e-51 206.5 250 49.2
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 4.5e-50 204.1 152 67.8
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 4.5e-50 204.1 193 57.5
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 1.0e-49 203.0 201 56.2
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 2.2e-49 201.8 188 56.9
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.9e-49 201.4 222 52.7
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 2.9e-49 201.4 181 56.4
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 3.8e-49 201.1 146 69.2
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.0e-49 200.7 179 57.0
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 5.0e-49 200.7 179 57.0
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.4e-48 199.1 146 66.4
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.9e-48 198.7 187 56.7
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.9e-48 198.7 153 65.4
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 2.5e-48 198.4 150 66.7
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 4.2e-48 197.6 140 68.6
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 4.2e-48 197.6 222 51.4
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 4.2e-48 197.6 151 66.2
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 7.2e-48 196.8 190 56.8
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 1.6e-47 195.7 154 63.6
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.1e-47 195.3 152 63.8
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.7e-47 194.9 185 56.8
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 3.6e-47 194.5 226 50.9
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 6.1e-47 193.7 154 64.9
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.8e-46 192.2 174 54.0
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 3.9e-46 191.0 149 62.4
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.1e-46 190.7 269 46.5
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 6.7e-46 190.3 128 71.1
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.1e-45 189.5 153 65.4
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 1.1e-45 189.5 150 64.7
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.5e-45 189.1 127 74.0
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.0e-45 188.7 229 48.5
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.4e-45 187.6 150 64.7
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 4.4e-45 187.6 285 43.5
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 7.4e-45 186.8 229 48.5
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 7.4e-45 186.8 229 48.5
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 7.4e-45 186.8 200 50.0
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 9.7e-45 186.4 152 63.2
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 9.7e-45 186.4 169 59.2
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 3.7e-44 184.5 169 58.6
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 3.7e-44 184.5 169 58.6
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 4.8e-44 184.1 152 62.5
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.8e-43 182.2 148 62.8
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 4.1e-43 181.0 153 59.5
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 6.9e-43 180.3 140 66.4
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.7e-41 175.6 172 53.5
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 2.5e-40 171.8 253 43.5
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.6e-39 169.1 130 65.4
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 2.3e-38 165.2 156 59.0
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 1.1e-37 162.9 155 55.5
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.7e-36 159.1 154 53.9
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 4.8e-36 157.5 154 57.1
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 1.4e-35 156.0 140 55.7
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 7.0e-35 153.7 195 47.2
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 5.5e-32 144.1 160 50.0
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.6e-31 142.5 206 43.2
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.0e-30 139.8 157 50.3
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.8e-22 112.5 83 65.1
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 9.8e-21 106.7 85 64.7
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.1e-19 101.3 72 65.3
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 4.1e-19 101.3 73 63.0
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 5.4e-19 100.9 73 65.8
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 7.0e-19 100.5 73 63.0
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.0e-18 99.0 73 61.6
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 2.7e-18 98.6 73 63.0
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 5.9e-18 97.4 73 63.0
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 7.2e-16 90.5 87 49.4
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 2.8e-15 88.6 73 57.5
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 4.7e-15 87.8 60 66.7
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.4e-14 86.3 73 54.8
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 2.3e-14 85.5 73 56.2
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 5.2e-14 84.3 73 54.8
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 4.4e-13 81.3 50 76.0
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 4.4e-13 81.3 50 76.0
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 3.7e-12 78.2 54 66.7
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.8e-11 75.9 100 45.0
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 9.2e-11 73.6 70 51.4
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 3.5e-10 71.6 141 29.8
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 3.5e-10 71.6 136 31.6
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 5.9e-10 70.9 62 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 1.0e-09 70.1 150 29.3
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.0e-09 70.1 141 27.7
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 2.3e-09 68.9 158 26.6
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 6.6e-09 67.4 169 25.4
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 6.6e-09 67.4 169 25.4
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 8.6e-09 67.0 168 26.2
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 1.1e-08 66.6 169 24.9
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.9e-08 65.9 98 36.7
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.2e-07 63.2 52 57.7
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 1.6e-07 62.8 135 28.1
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 2.1e-07 62.4 147 28.6
Duzib151G0326 Durio zibethinus HOM05D006740 ORTHO05D008571 3.6e-07 61.6 167 25.1
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 4.7e-07 61.2 152 27.6
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 4.7e-07 61.2 115 28.7
Gohir.D02G001700 Gossypium hirsutum HOM05D006740 ORTHO05D008571 8.0e-07 60.5 152 27.6
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 1.4e-06 59.7 173 25.4
SalBow3G2352 Salvia bowleyana HOM05D006740 ORTHO05D008571 2.3e-06 58.9 141 27.7
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 3.0e-06 58.5 120 38.3
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 3.0e-06 58.5 138 30.4
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 4.0e-06 58.2 141 27.7
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 4.0e-06 58.2 138 30.4
Phvul.002G180100 Phaseolus vulgaris HOM05D006740 ORTHO05D008571 5.2e-06 57.8 126 29.4
Sabra05G0137900 Salix brachista HOM05D000424 ORTHO05D000355 5.2e-06 57.8 99 32.3
SalBow3G1009 Salvia bowleyana HOM05D006740 ORTHO05D008571 5.2e-06 57.8 141 27.7
Atru.BG.215.p Acer truncatum HOM05D006740 ORTHO05D008571 6.8e-06 57.4 125 27.2
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 8.9e-06 57.0 141 27.7
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 8.9e-06 57.0 129 27.9
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 8.9e-06 57.0 134 28.4
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 8.9e-06 57.0 136 28.7


User provided reference genes

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