Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 0.0e+00 4194.4 2255 100.0
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 0.0e+00 1112.8 2133 40.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 0.0e+00 1096.3 2258 38.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 4.8e-255 886.3 2201 38.3
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.2e-239 834.3 1657 40.3
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 3.5e-165 587.8 2256 32.0
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 4.2e-158 564.3 2262 30.8
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.3e-156 558.5 2081 31.9
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.2e-154 552.0 2066 31.6
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 3.1e-153 548.1 2284 30.8
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.2e-152 546.2 2079 31.9
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 2.0e-152 545.4 2227 30.4
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 7.4e-147 526.9 2045 31.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 3.8e-143 514.6 2077 31.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.6e-141 509.2 2274 30.3
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 4.7e-141 507.7 2291 30.3
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 5.7e-139 500.7 2045 30.9
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 6.3e-138 497.3 2026 30.8
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.3e-135 489.6 2041 30.4
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.2e-135 488.8 2288 30.0
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 4.4e-131 474.6 2192 29.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.2e-130 472.2 2331 29.7
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.4e-129 469.5 2051 31.0
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.2e-128 466.5 2072 29.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.0e-127 461.1 902 41.5
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 6.5e-127 460.7 2024 30.3
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 8.5e-127 460.3 2109 30.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 8.5e-127 460.3 2106 28.2
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.1e-126 459.9 1988 30.7
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 4.7e-125 454.5 900 42.8
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.0e-125 453.8 902 40.9
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 8.0e-125 453.8 2339 28.9
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 4.0e-124 451.4 2041 31.0
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 5.2e-124 451.1 2243 28.4
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.5e-123 449.5 2146 30.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 4.4e-123 448.0 959 40.5
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-122 446.4 940 41.0
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.7e-122 446.0 2227 28.6
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 6.3e-122 444.1 901 42.3
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 8.3e-122 443.7 847 43.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 8.3e-122 443.7 1587 31.6
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-121 443.4 2309 28.1
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.6e-120 439.5 2245 29.4
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.5e-120 438.3 902 36.0
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 5.9e-120 437.6 897 41.6
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 7.7e-120 437.2 902 40.7
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.1e-117 429.1 908 41.3
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 2.1e-117 429.1 957 38.0
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.7e-117 428.7 1164 35.4
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 4.0e-116 424.9 2055 29.9
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 9.8e-115 420.2 2253 28.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.7e-114 419.5 1793 29.6
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 2.2e-114 419.1 2140 28.7
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.4e-113 415.6 2107 28.7
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 3.1e-113 415.2 2274 29.2
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.1e-110 406.8 2043 29.9
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.5e-110 405.6 2258 27.8
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 7.5e-107 394.0 2277 27.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.2e-105 388.7 1018 38.0
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.0e-103 383.6 921 38.9
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 6.6e-103 380.9 911 39.8
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.5e-102 379.8 612 48.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 1.2e-101 376.7 2262 28.1
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.0e-100 373.6 1116 34.6
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.0e-100 373.6 2247 28.6
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.4e-100 373.2 981 37.9
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 4.0e-100 371.7 2097 27.1
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 8.9e-100 370.5 2097 27.1
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 9.8e-99 367.1 2063 28.6
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 4.9e-98 364.8 2208 28.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 3.2e-97 362.1 904 38.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.2e-97 362.1 2206 28.9
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.6e-96 359.8 929 38.1
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 3.5e-96 358.6 970 34.5
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.7e-95 356.3 938 34.9
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.7e-95 356.3 2164 27.1
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 5.0e-95 354.8 616 47.1
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.5e-94 352.4 918 37.6
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 7.3e-94 350.9 880 36.0
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.2e-93 350.1 880 36.0
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 2.1e-93 349.4 998 36.5
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 6.2e-93 347.8 2019 28.7
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 8.1e-93 347.4 1042 34.6
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.4e-91 342.0 2040 27.3
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 6.4e-90 337.8 914 34.9
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 6.4e-90 337.8 914 34.9
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.4e-90 337.8 2378 28.2
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 8.3e-90 337.4 960 34.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.1e-89 337.0 1126 33.2
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 5.4e-89 334.7 2037 27.4
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 3.0e-87 328.9 781 32.7
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.9e-86 326.2 775 35.4
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.6e-85 322.0 2074 27.2
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 7.8e-80 304.3 2046 27.0
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.7e-79 303.1 1870 25.7
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 2.5e-78 299.3 2125 26.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.2e-77 297.0 1607 27.8
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.4e-76 293.5 1774 26.4
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 6.8e-76 291.2 1144 31.6
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.9e-73 283.1 928 33.6
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.4e-73 282.7 909 33.7
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 5.4e-73 281.6 1069 32.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.1e-72 279.6 1068 32.8
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.9e-70 273.1 728 37.5
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 6.2e-69 268.1 842 35.6
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.0e-67 263.1 768 32.3
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 2.5e-62 246.1 880 31.7
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.0e-59 236.5 616 32.0
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.9e-57 229.9 732 35.0
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 5.5e-57 228.4 677 30.7
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.5e-54 220.3 456 42.5
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 7.6e-51 208.0 919 32.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.9e-50 205.3 350 39.4
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 3.9e-47 195.7 321 50.5
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.3e-39 170.6 914 30.7
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.3e-37 164.1 1767 25.5
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.8e-36 160.2 120 63.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 3.6e-32 146.0 643 29.2
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.6e-32 145.6 126 57.9
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.7e-29 136.0 82 78.0
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 2.2e-26 126.7 254 33.9
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.1e-22 114.4 872 28.9
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.8e-21 109.0 248 48.4
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.8e-20 107.1 375 30.4
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.8e-18 99.4 142 45.8
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 5.0e-18 99.0 95 55.8
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.8e-15 90.5 273 30.4
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 2.3e-15 90.1 286 29.4
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-14 87.8 311 31.2
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 9.7e-14 84.7 1669 23.2
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 2.4e-12 80.1 402 28.6
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 9.1e-12 78.2 142 38.0
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.5e-11 75.9 131 42.7
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 5.9e-11 75.5 80 53.8
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 3.0e-07 63.2 669 24.1
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 9.8e-06 58.2 144 31.2


User provided reference genes

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