Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund17271 Selenicereus undatus HOM05D002920 ORTHO05D003118 1.9e-78 295.8 155 100.0
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 1.5e-35 153.3 150 57.3
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 4.9e-34 148.3 163 55.2
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 1.6e-32 143.3 155 54.2
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 4.6e-32 141.7 151 55.6
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 3.0e-31 139.0 150 53.3
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 3.0e-31 139.0 151 56.3
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 1.5e-30 136.7 152 55.3
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.5e-30 136.7 150 54.7
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 1.9e-30 136.3 149 51.0
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 1.9e-30 136.3 155 54.2
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 1.9e-30 136.3 152 55.9
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 2.5e-30 136.0 150 54.7
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 3.3e-30 135.6 160 53.1
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 3.3e-30 135.6 152 53.3
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 3.3e-30 135.6 159 50.9
FAN13G0555 Fragaria x ananassa HOM05D002920 ORTHO05D003118 7.4e-30 134.4 170 51.2
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 7.4e-30 134.4 160 51.9
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 9.6e-30 134.0 152 53.3
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 9.6e-30 134.0 151 55.6
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 9.6e-30 134.0 150 54.0
Gohir.A05G264400 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.3e-29 133.7 152 56.6
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 1.3e-29 133.7 151 55.0
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 1.3e-29 133.7 139 59.0
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 1.6e-29 133.3 151 55.0
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 2.1e-29 132.9 151 55.0
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.1e-29 132.9 154 53.2
QL09p018203 Quercus lobata HOM05D002920 ORTHO05D003118 2.1e-29 132.9 151 52.3
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 2.8e-29 132.5 170 50.6
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 2.8e-29 132.5 170 50.6
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.8e-29 132.5 153 56.2
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 2.8e-29 132.5 153 56.2
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 2.8e-29 132.5 161 51.6
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 2.8e-29 132.5 150 51.3
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.7e-29 132.1 160 50.6
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 3.7e-29 132.1 152 55.3
MD08G1208300 Malus domestica HOM05D002920 ORTHO05D003118 3.7e-29 132.1 161 51.6
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 3.7e-29 132.1 151 55.0
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 4.8e-29 131.7 138 58.0
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 4.8e-29 131.7 170 50.6
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 4.8e-29 131.7 150 52.7
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 4.8e-29 131.7 150 53.3
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 6.2e-29 131.3 151 55.0
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 6.2e-29 131.3 161 50.3
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 6.2e-29 131.3 127 59.1
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 8.1e-29 131.0 156 55.1
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 8.1e-29 131.0 151 55.0
CSS0008058 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 8.1e-29 131.0 151 53.0
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 1.1e-28 130.6 154 53.2
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 1.1e-28 130.6 154 52.6
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 1.4e-28 130.2 153 53.6
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 1.4e-28 130.2 151 57.6
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 1.4e-28 130.2 152 53.9
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 1.4e-28 130.2 153 51.6
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 1.8e-28 129.8 151 54.3
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 1.8e-28 129.8 154 53.9
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.8e-28 129.8 151 53.6
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 1.8e-28 129.8 140 55.7
Solyc04g076540.4 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.4e-28 129.4 120 60.0
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 3.1e-28 129.0 152 52.0
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 3.1e-28 129.0 149 53.7
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 3.1e-28 129.0 137 54.7
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 3.1e-28 129.0 119 62.2
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 4.0e-28 128.6 135 54.8
Oeu038176.1 Olea europaea HOM05D002920 ORTHO05D003118 4.0e-28 128.6 151 57.0
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 4.0e-28 128.6 152 52.0
Ca_05459_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 5.3e-28 128.3 139 59.0
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 5.3e-28 128.3 153 54.9
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 5.3e-28 128.3 151 52.3
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 5.3e-28 128.3 152 55.9
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 5.3e-28 128.3 152 55.9
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 5.3e-28 128.3 151 53.0
Atru.chr13.989 Acer truncatum HOM05D002920 ORTHO05D003118 6.9e-28 127.9 152 53.9
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 9.0e-28 127.5 164 48.8
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 9.0e-28 127.5 151 53.6
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 9.0e-28 127.5 117 61.5
PGSC0003DMG400002051 Solanum tuberosum HOM05D002920 ORTHO05D003118 9.0e-28 127.5 150 52.7
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 1.2e-27 127.1 118 60.2
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 1.5e-27 126.7 164 48.8
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 1.5e-27 126.7 161 51.6
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 1.5e-27 126.7 164 48.8
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 2.0e-27 126.3 153 54.2
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 2.6e-27 125.9 140 55.7
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 2.6e-27 125.9 151 52.3
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.6e-27 125.9 156 51.9
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 2.6e-27 125.9 162 50.0
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 2.6e-27 125.9 139 54.7
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 3.4e-27 125.6 149 55.0
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 4.5e-27 125.2 141 56.0
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 5.8e-27 124.8 144 54.2
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 5.8e-27 124.8 144 54.2
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 7.6e-27 124.4 137 56.2
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 1.0e-26 124.0 150 54.0
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 1.3e-26 123.6 150 54.0
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 1.3e-26 123.6 142 54.2
C01p35900 Brassica napus HOM05D002920 ORTHO05D003118 1.3e-26 123.6 142 54.2
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 1.3e-26 123.6 142 54.2
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.7e-26 123.2 136 55.1
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 1.7e-26 123.2 150 54.0
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 1.7e-26 123.2 152 52.6
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 2.2e-26 122.9 137 54.7
MD08G1201600 Malus domestica HOM05D002920 ORTHO05D003118 2.2e-26 122.9 161 47.8
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 2.9e-26 122.5 149 53.0
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 2.9e-26 122.5 156 50.6
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 3.8e-26 122.1 142 53.5
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 3.8e-26 122.1 142 53.5
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 3.8e-26 122.1 140 54.3
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 3.8e-26 122.1 149 53.0
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 3.8e-26 122.1 125 57.6
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 6.5e-26 121.3 159 49.7
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 6.5e-26 121.3 169 49.7
CANSAT25G0689 Cannabis sativa HOM05D002920 ORTHO05D003118 8.4e-26 120.9 151 49.7
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.1e-25 120.6 142 53.5
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 1.9e-25 119.8 143 53.8
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 1.9e-25 119.8 145 53.1
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 1.9e-25 119.8 145 53.1
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 1.9e-25 119.8 148 50.7
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 3.2e-25 119.0 151 52.3
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 3.2e-25 119.0 128 55.5
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 5.5e-25 118.2 141 54.6
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 7.1e-25 117.9 154 52.6
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 1.2e-24 117.1 92 71.7
vmacro21352 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.2e-24 117.1 152 51.3
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 1.6e-24 116.7 139 54.7
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 1.6e-24 116.7 139 54.7
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 1.6e-24 116.7 139 54.7
SEGI_15502 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 2.1e-24 116.3 153 46.4
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 4.6e-24 115.2 148 52.7
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 4.6e-24 115.2 152 49.3
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 1.3e-23 113.6 156 46.2
Psat2g064120 Pisum sativum HOM05D002920 ORTHO05D003118 2.3e-23 112.8 168 48.2
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 3.0e-23 112.5 135 55.6
CARHR053650 Cardamine hirsuta HOM05D002920 ORTHO05D003118 3.9e-23 112.1 115 58.3
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 3.9e-23 112.1 152 50.7
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 3.3e-22 109.0 149 47.0
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 3.3e-22 109.0 140 55.0
Rhsim06G0070400 Rhododendron simsii HOM05D002920 ORTHO05D009497 5.7e-22 108.2 150 49.3
Lsat_1_v5_gn_9_80681 Lactuca sativa HOM05D002920 ORTHO05D003118 7.4e-22 107.8 119 55.5
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 7.4e-22 107.8 156 47.4
Os03g0353701 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 1.3e-21 107.1 166 45.2
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 1.6e-21 106.7 162 46.3
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 8.2e-21 104.4 128 50.8
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 8.2e-21 104.4 156 44.9
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 1.1e-20 104.0 108 58.3
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 1.1e-20 104.0 177 42.9
Lsat_1_v5_gn_7_70960 Lactuca sativa HOM05D002920 ORTHO05D003118 1.4e-20 103.6 162 49.4
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 2.4e-20 102.8 150 48.0
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 3.1e-20 102.4 126 47.6
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 4.0e-20 102.1 151 49.0
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 9.0e-20 100.9 166 45.8
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 1.5e-19 100.1 166 44.0
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 5.8e-19 98.2 168 43.5
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 1.3e-18 97.1 118 55.1
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 2.5e-17 92.8 113 50.4
Sp1g33860 Schrenkiella parvula HOM05D002920 ORTHO05D003118 7.1e-17 91.3 140 46.4
CDE07G0298 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 9.3e-17 90.9 158 44.9
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.0e-15 87.4 140 42.9
CAN.G375.38 Capsicum annuum HOM05D002920 ORTHO05D003118 4.3e-14 82.0 57 70.2
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 1.8e-12 76.6 149 40.9
Haze_22479 Corylus avellana HOM05D002920 ORTHO05D003118 2.4e-12 76.3 88 53.4
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 7.7e-11 71.2 162 36.4
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 1.6e-08 63.5 154 37.0
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 6.1e-08 61.6 172 32.6
C08p07060 Brassica napus HOM05D002920 ORTHO05D003118 1.1e-06 57.4 79 48.1
BolC8t47550H Brassica oleracea HOM05D002920 ORTHO05D003118 1.1e-06 57.4 79 48.1


User provided reference genes

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