Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.0e-81 306.6 148 100.0
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.4e-54 216.5 129 82.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.1e-54 214.9 150 73.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 5.9e-53 211.1 154 71.4
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 7.7e-53 210.7 126 81.7
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 7.7e-53 210.7 152 71.7
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 7.7e-53 210.7 152 71.7
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 1.0e-52 210.3 126 81.0
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.7e-52 209.5 148 73.0
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.9e-52 208.8 155 72.3
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.8e-52 208.4 152 71.1
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.5e-52 207.6 136 75.7
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 6.5e-52 207.6 126 79.4
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 8.5e-52 207.2 120 83.3
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 8.5e-52 207.2 144 73.6
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.1e-51 206.8 125 80.0
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.5e-51 206.5 123 80.5
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.9e-51 206.1 148 72.3
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.9e-51 206.1 131 78.6
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.5e-51 205.7 148 71.6
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 2.5e-51 205.7 148 71.6
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.2e-51 205.3 160 68.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 3.2e-51 205.3 154 70.8
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 4.2e-51 204.9 152 71.7
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 5.5e-51 204.5 125 79.2
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 5.5e-51 204.5 121 81.8
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.4e-51 203.8 179 61.5
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.2e-50 203.4 125 77.6
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.2e-50 203.4 137 74.5
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.2e-50 203.4 154 71.4
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.1e-50 202.6 144 70.8
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.1e-50 202.6 137 73.7
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.6e-50 201.8 153 69.3
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 4.7e-50 201.4 144 70.8
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.7e-50 201.4 135 72.6
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 6.1e-50 201.1 147 70.7
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 8.0e-50 200.7 126 77.8
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 8.0e-50 200.7 147 70.7
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.0e-49 200.3 148 70.3
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 1.4e-49 199.9 125 76.0
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 2.3e-49 199.1 121 81.8
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.3e-49 199.1 125 75.2
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.3e-49 199.1 125 76.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.0e-49 198.7 125 76.0
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 4.0e-49 198.4 142 70.4
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 4.0e-49 198.4 149 71.1
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.2e-49 198.0 146 71.2
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 6.8e-49 197.6 157 66.9
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 8.8e-49 197.2 152 69.1
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.2e-48 196.8 149 70.5
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.0e-48 196.1 153 68.0
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.6e-48 195.7 122 77.9
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.4e-48 195.3 143 70.6
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.4e-48 195.3 143 70.6
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.4e-48 195.3 121 77.7
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 4.4e-48 194.9 145 69.7
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 4.4e-48 194.9 143 69.9
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 5.7e-48 194.5 147 69.4
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 5.7e-48 194.5 146 69.2
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 7.5e-48 194.1 125 76.0
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 7.5e-48 194.1 130 73.1
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 7.5e-48 194.1 157 66.9
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 9.8e-48 193.7 125 75.2
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 9.8e-48 193.7 126 73.8
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 9.8e-48 193.7 157 65.6
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.3e-47 193.4 148 68.2
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-47 193.4 148 68.2
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-47 193.4 148 68.2
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.7e-47 193.0 127 74.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 2.2e-47 192.6 121 76.9
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.8e-47 192.2 148 68.9
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.8e-47 192.2 149 67.8
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 3.7e-47 191.8 147 67.3
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 3.7e-47 191.8 147 67.3
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 3.7e-47 191.8 147 67.3
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 3.7e-47 191.8 147 69.4
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 3.7e-47 191.8 146 69.9
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 4.8e-47 191.4 119 77.3
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 6.3e-47 191.0 125 76.0
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.3e-47 191.0 148 68.2
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 6.3e-47 191.0 157 65.6
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 8.3e-47 190.7 147 67.3
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.1e-46 190.3 162 66.7
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 1.1e-46 190.3 149 68.5
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.1e-46 190.3 120 79.2
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-46 189.9 161 64.0
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.4e-46 189.9 156 64.7
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 2.4e-46 189.1 129 73.6
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 4.1e-46 188.3 151 66.9
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 9.1e-46 187.2 171 61.4
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 9.1e-46 187.2 133 72.2
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.1e-46 187.2 157 64.3
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 9.1e-46 187.2 144 67.4
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.2e-45 186.8 129 70.5
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.2e-45 186.8 159 64.8
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.2e-45 186.8 149 68.5
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.6e-45 186.4 149 68.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 2.0e-45 186.0 148 68.2
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.5e-45 185.3 149 65.8
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.5e-45 185.3 166 60.8
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 4.5e-45 184.9 127 72.4
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 5.9e-45 184.5 122 72.1
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 7.7e-45 184.1 123 70.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.7e-45 184.1 134 68.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-44 183.3 154 64.3
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.7e-44 183.0 120 75.0
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.7e-44 183.0 118 77.1
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 2.9e-44 182.2 147 66.0
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 5.0e-44 181.4 116 78.4
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.6e-44 180.6 145 66.2
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 1.2e-42 176.8 170 59.4
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.6e-42 176.4 154 63.0
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.6e-42 176.4 150 63.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 4.7e-42 174.9 116 74.1
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.0e-41 173.7 138 66.7
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.4e-41 173.3 116 73.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-41 172.2 158 61.4
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-41 172.2 158 61.4
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.0e-41 171.8 148 66.2
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 8.9e-41 170.6 120 70.8
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.6e-40 169.1 106 77.4
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.4e-40 168.7 105 78.1
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.7e-40 167.9 143 62.9
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.8e-40 167.2 146 63.7
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 2.8e-39 165.6 143 63.6
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 3.7e-39 165.2 182 54.4
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.9e-39 164.9 146 62.3
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.8e-38 162.9 122 67.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-38 162.5 105 73.3
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 7.0e-38 161.0 120 64.2
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.0e-37 159.5 95 81.1
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.7e-37 159.1 104 73.1
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 4.5e-37 158.3 104 73.1
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.3e-36 156.8 132 63.6
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.7e-36 156.4 104 76.0
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 6.6e-36 154.5 155 55.5
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.3e-35 151.8 148 58.1
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.3e-35 151.8 148 58.1
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.5e-35 150.6 154 55.8
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 2.1e-34 149.4 107 70.1
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 6.1e-34 147.9 114 66.7
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 3.0e-33 145.6 146 58.9
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 6.8e-33 144.4 117 68.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 6.8e-33 144.4 127 59.8
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 8.9e-33 144.1 123 59.3
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 3.4e-32 142.1 95 70.5
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.6e-26 123.2 107 60.7
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.3e-25 119.4 132 50.0
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.2e-24 117.1 76 77.6
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.4e-22 110.2 119 47.1
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.6e-21 106.7 90 64.4
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 5.1e-20 101.7 58 81.0
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.5e-19 99.4 53 81.1
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 5.6e-19 98.2 59 79.7
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 2.8e-18 95.9 77 62.3
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 3.6e-18 95.5 77 62.3
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 6.2e-18 94.7 74 68.9
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 8.1e-18 94.4 129 51.9
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 5.2e-17 91.7 60 75.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 8.9e-17 90.9 77 59.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 2.1e-13 79.7 47 76.6
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 2.3e-12 76.3 137 35.0
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.1e-09 67.4 155 31.0
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 2.0e-08 63.2 119 39.5
Sabra14G0052800 Salix brachista HOM05D000186 ORTHO05D001124 2.6e-08 62.8 142 35.2
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.4e-08 62.0 39 69.2


User provided reference genes

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