Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.5e-308 1061.2 526 100.0
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.8e-254 881.7 520 83.5
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 3.2e-250 868.2 513 83.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.1e-245 853.2 521 80.6
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.0e-240 835.1 519 78.2
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.4e-237 826.2 522 77.8
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.6e-230 802.7 517 76.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.6e-230 802.7 482 81.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 9.0e-229 797.0 514 77.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.7e-227 792.7 520 75.2
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.4e-227 790.4 526 75.7
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 8.4e-227 790.4 488 79.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-226 790.0 525 75.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.1e-226 790.0 520 74.2
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.9e-226 789.3 525 75.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.4e-226 788.9 537 72.8
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.2e-226 788.1 508 76.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.4e-226 787.7 525 75.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.1e-225 785.8 513 76.2
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.3e-224 783.1 522 74.1
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-224 782.7 526 75.3
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.7e-224 782.7 523 75.0
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.7e-224 782.7 501 76.6
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 5.1e-224 781.2 509 76.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.9e-223 779.2 517 75.6
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 9.6e-223 776.9 519 75.0
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.6e-222 776.2 512 74.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.1e-222 775.8 518 74.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.8e-222 775.4 526 74.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 4.8e-222 774.6 515 74.4
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 6.2e-222 774.2 516 74.2
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.4e-221 773.1 516 75.4
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.4e-221 773.1 521 74.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 9.0e-221 770.4 504 75.0
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.2e-220 770.0 509 76.0
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.0e-220 769.2 519 74.2
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.6e-220 768.8 517 74.3
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.5e-220 768.1 533 73.4
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 5.8e-220 767.7 533 73.2
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.8e-220 767.7 527 73.8
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 7.6e-220 767.3 521 73.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 7.6e-220 767.3 519 74.2
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.7e-219 766.1 511 74.4
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 8.4e-219 763.8 514 74.9
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.4e-218 763.1 519 73.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.4e-218 763.1 523 73.6
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 1.9e-218 762.7 522 73.2
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 5.4e-218 761.1 510 74.3
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 9.3e-218 760.4 533 72.6
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.2e-217 760.0 506 74.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.5e-217 758.4 496 75.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 3.5e-217 758.4 523 73.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.3e-216 755.7 517 73.3
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 5.1e-216 754.6 518 73.4
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.7e-216 754.2 546 70.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.1e-215 753.4 514 73.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.5e-215 753.1 513 73.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.9e-215 752.7 514 73.5
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.6e-215 751.1 523 72.8
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 9.6e-215 750.4 476 79.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.6e-214 749.6 510 75.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 9.0e-213 743.8 513 72.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 9.0e-213 743.8 491 75.2
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 5.8e-212 741.1 545 69.9
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 2.9e-211 738.8 542 69.2
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 4.9e-211 738.0 509 72.3
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 3.2e-210 735.3 462 78.8
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 5.5e-210 734.6 514 72.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 3.5e-209 731.9 491 73.9
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.5e-207 726.5 473 76.1
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.9e-207 726.1 504 74.6
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 5.7e-207 724.5 523 70.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.4e-207 724.2 526 70.7
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 7.4e-207 724.2 595 65.0
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 5.3e-205 718.0 523 69.6
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 2.6e-204 715.7 521 69.5
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 2.6e-204 715.7 559 66.7
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.3e-203 713.4 521 69.3
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.5e-202 708.0 525 69.1
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.9e-200 701.8 515 69.3
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 6.7e-200 701.0 522 69.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.2e-198 696.0 514 68.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 3.1e-197 692.2 531 67.8
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 3.1e-197 692.2 531 67.8
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.0e-196 689.5 436 78.7
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.0e-195 687.2 530 67.9
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.5e-194 682.6 490 71.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.2e-193 680.2 553 64.7
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-189 666.8 511 66.3
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 5.9e-188 661.4 532 65.6
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 6.5e-187 657.9 485 69.3
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.1e-186 657.1 485 69.3
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.0e-184 650.6 521 66.2
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 9.7e-183 644.0 524 63.4
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.1e-181 639.0 430 75.8
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.5e-180 635.2 522 63.8
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-179 633.6 528 62.9
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.3e-174 617.1 522 59.8
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.8e-174 615.9 480 64.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-173 614.0 488 64.3
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.7e-171 606.7 476 63.9
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.2e-169 600.5 443 69.3
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 3.6e-169 599.0 494 61.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 6.8e-168 594.7 543 59.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 4.7e-161 572.0 363 78.0
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 8.0e-161 571.2 363 77.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-160 570.9 472 62.9
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.0e-160 569.3 457 65.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.1e-157 558.9 530 55.8
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.2e-156 557.4 340 80.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 5.9e-156 555.1 537 55.1
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.3e-155 553.9 392 69.6
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.9e-154 550.1 392 71.7
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.3e-154 549.3 369 74.5
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 5.6e-154 548.5 489 57.7
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.6e-151 539.7 476 59.0
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.6e-145 520.4 362 73.5
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.2e-143 514.2 490 55.7
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.3e-139 500.7 289 83.0
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.4e-136 490.7 533 49.5
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.1e-131 472.2 425 59.1
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.2e-129 467.6 344 70.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.5e-127 460.7 364 67.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 9.3e-117 424.9 427 51.8
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-111 407.5 484 51.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.9e-101 374.0 375 57.9
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.7e-99 365.5 332 60.2
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-87 328.2 323 58.2
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.0e-86 325.1 298 58.1
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.6e-84 317.8 244 66.4
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.7e-75 285.8 222 63.5
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.7e-74 282.7 247 59.1
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.7e-73 280.0 396 40.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-72 278.5 164 78.7
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.5e-63 246.9 145 80.0
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.9e-61 241.1 312 42.0
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.3e-59 234.2 147 75.5
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.0e-59 233.8 146 75.3
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 3.7e-57 226.9 327 42.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.5e-55 220.3 226 56.2
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 9.2e-40 169.1 169 55.0
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.7e-39 166.0 100 75.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.5e-37 161.8 194 50.5
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.7e-36 156.8 100 71.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.6e-26 124.4 373 27.6
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 7.5e-26 122.9 124 57.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 2.9e-25 120.9 68 77.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.2e-18 99.0 448 25.0
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 8.3e-17 92.8 61 73.8
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 7.1e-16 89.7 82 53.7
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 7.3e-13 79.7 72 58.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 8.9e-11 72.8 45 73.3
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 2.6e-10 71.2 38 81.6
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.7e-09 68.6 54 55.6
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.4e-08 64.7 33 84.8
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.5e-07 60.8 58 56.9
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 2.3e-06 58.2 40 67.5
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 2.3e-06 58.2 40 67.5
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.6e-06 56.2 57 57.9


User provided reference genes

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