Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.9e-290 1000.7 496 100.0
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 9.5e-281 969.5 534 91.9
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.1e-258 894.0 496 87.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.9e-257 892.1 496 87.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.1e-255 886.3 496 86.9
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 3.2e-252 874.8 494 84.2
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 7.1e-252 873.6 494 85.4
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 9.3e-252 873.2 494 86.2
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.2e-251 872.8 493 85.2
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 3.5e-251 871.3 496 84.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 8.7e-250 866.7 493 85.2
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.5e-249 865.9 494 86.0
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 4.3e-249 864.4 494 85.6
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 5.6e-249 864.0 487 86.4
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 2.8e-248 861.7 490 85.1
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.8e-248 860.9 493 85.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 8.1e-248 860.1 494 85.8
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.1e-247 859.8 477 87.2
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.1e-247 859.8 495 84.4
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.4e-247 859.4 487 85.2
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 1.4e-247 859.4 495 84.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.4e-247 859.4 493 85.0
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.8e-247 859.0 494 84.0
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.4e-247 858.6 494 84.8
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 5.3e-247 857.4 494 83.6
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.9e-247 857.1 494 83.6
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 9.0e-247 856.7 494 83.2
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.2e-246 856.3 495 84.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.6e-246 855.1 496 83.5
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.4e-246 854.7 494 84.4
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.4e-246 854.7 489 84.7
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.5e-246 854.4 495 84.0
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 4.5e-246 854.4 494 83.6
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.5e-246 854.4 494 83.6
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 5.8e-246 854.0 494 83.2
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.6e-246 853.6 494 84.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 6.4e-245 850.5 494 84.0
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 1.1e-244 849.7 495 83.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.1e-244 849.7 499 82.0
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 2.4e-244 848.6 496 82.7
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.2e-244 848.2 494 83.0
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 4.2e-244 847.8 493 84.4
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 5.5e-244 847.4 494 83.2
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 7.1e-244 847.0 489 83.4
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 9.3e-244 846.7 494 83.0
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.2e-243 846.3 494 82.8
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.1e-243 845.5 495 82.8
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.7e-243 845.1 490 83.5
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.7e-243 845.1 494 83.0
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 2.7e-243 845.1 494 83.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 4.6e-243 844.3 493 82.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.0e-243 844.0 494 82.8
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 3.9e-242 841.3 489 83.0
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 5.1e-242 840.9 494 83.8
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 6.7e-242 840.5 494 83.0
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 8.7e-242 840.1 508 82.1
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.5e-241 839.3 495 82.2
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.9e-241 839.0 504 81.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.5e-241 838.6 495 82.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.3e-241 838.2 488 82.8
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 4.3e-241 837.8 496 81.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 4.3e-241 837.8 492 82.1
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 4.3e-241 837.8 480 83.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 7.4e-241 837.0 493 82.2
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 9.6e-241 836.6 499 81.8
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.6e-240 835.9 493 82.8
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.6e-240 835.9 493 81.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.6e-240 835.9 494 82.4
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-240 835.5 493 82.4
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.1e-240 835.5 490 82.7
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 4.8e-240 834.3 490 82.7
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 4.8e-240 834.3 493 82.4
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.1e-239 833.2 490 81.8
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.4e-239 832.8 528 78.0
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.4e-239 832.8 497 81.9
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.1e-239 831.6 490 82.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.1e-239 831.6 493 81.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.1e-239 831.6 496 80.4
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 4.0e-239 831.2 487 82.8
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 4.0e-239 831.2 497 82.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 9.0e-239 830.1 490 82.4
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 9.0e-239 830.1 496 81.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 2.0e-238 828.9 494 81.8
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.0e-238 828.9 487 83.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.0e-237 826.6 493 80.9
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-237 826.2 490 81.6
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.3e-237 826.2 490 81.2
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 1.7e-237 825.9 498 80.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.2e-237 825.5 489 81.2
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.4e-237 823.5 493 81.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.4e-236 822.8 493 81.1
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.9e-236 822.4 494 81.0
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.2e-236 821.6 492 80.7
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 5.5e-236 820.8 493 80.7
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.1e-235 818.9 491 80.9
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.0e-234 816.6 493 80.7
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.0e-234 816.6 494 80.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.9e-233 812.4 497 79.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.8e-229 798.1 485 79.8
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 8.7e-226 786.9 487 79.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 5.0e-221 771.2 434 84.3
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 2.5e-220 768.8 438 85.4
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.6e-219 766.1 488 76.8
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.7e-219 765.4 492 76.4
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.4e-218 763.1 444 82.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 8.8e-218 760.4 512 73.6
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 9.7e-217 756.9 492 75.4
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 8.2e-216 753.8 445 82.5
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.1e-215 753.4 441 83.0
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.8e-208 728.8 441 81.6
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.3e-205 719.9 440 80.2
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 3.8e-205 718.4 488 71.1
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.7e-200 701.8 383 88.3
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 2.4e-199 699.1 486 70.8
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.0e-197 693.7 487 68.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 7.7e-190 667.5 405 79.3
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.0e-189 667.2 491 69.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.2e-189 666.0 496 69.6
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.1e-187 659.4 383 83.6
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.2e-182 643.7 471 70.1
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 4.3e-180 635.2 508 63.2
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 2.4e-175 619.4 499 65.1
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-174 615.5 383 78.9
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 4.4e-169 598.6 391 75.7
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.3e-165 587.0 463 68.3
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.2e-161 573.9 382 74.9
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 5.1e-157 558.5 346 78.3
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 2.9e-152 542.7 528 52.3
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.4e-136 488.4 266 88.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 5.6e-124 448.7 610 44.4
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.7e-120 437.2 245 85.3
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.0e-112 411.4 238 81.1
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.5e-111 406.8 301 68.1
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 8.7e-109 398.3 254 76.0
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.7e-108 394.8 228 82.9
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.6e-107 394.0 434 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.5e-105 386.0 238 76.1
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.7e-104 384.0 482 47.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 3.7e-99 366.3 302 66.6
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.6e-94 349.7 236 72.9
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-90 337.8 310 59.0
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.6e-89 334.3 236 69.9
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.4e-82 311.2 249 66.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 9.8e-60 235.3 260 52.3
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 4.1e-58 229.9 159 71.7
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.3e-56 224.2 147 72.1
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 3.3e-55 220.3 299 46.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.0e-48 198.7 146 67.1
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 9.5e-47 192.2 103 88.3
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.0e-44 184.5 96 89.6
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.0e-44 184.5 151 65.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.4e-44 183.3 104 84.6
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.1e-39 168.7 106 74.5
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 6.8e-37 159.5 129 62.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.0e-32 144.1 75 90.7
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 5.1e-32 143.3 161 49.7
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 3.6e-30 137.1 79 78.5
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 6.4e-27 126.3 85 71.8
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 7.1e-18 96.3 93 54.8
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 3.3e-15 87.4 73 64.4
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.6e-14 85.1 61 73.8
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 3.9e-08 63.9 30 90.0
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 3.3e-07 60.8 47 61.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 7.4e-07 59.7 38 76.3


User provided reference genes

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