Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 0.0e+00 1083.6 534 100.0
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.3e-280 969.1 534 91.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.0e-251 873.2 534 81.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 4.2e-250 867.8 534 81.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 5.5e-250 867.5 534 81.1
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 7.4e-247 857.1 532 78.9
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.7e-246 855.9 531 79.8
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.7e-246 855.9 532 80.6
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 4.8e-246 854.4 532 79.7
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 2.4e-245 852.0 534 79.0
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 5.9e-244 847.4 531 79.3
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 7.7e-244 847.0 532 80.3
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 2.2e-243 845.5 526 80.4
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.2e-243 845.5 532 79.9
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.9e-242 842.4 528 79.4
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.9e-242 842.4 534 77.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.5e-242 842.0 531 79.8
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.2e-242 841.3 532 80.1
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.2e-242 840.5 532 79.3
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 7.2e-242 840.5 531 79.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 9.4e-242 840.1 525 79.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 9.4e-242 840.1 533 79.0
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 9.4e-242 840.1 532 78.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.6e-241 839.3 515 81.0
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 2.1e-241 839.0 533 79.5
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.7e-241 838.6 532 78.0
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 3.6e-241 838.2 532 78.0
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.7e-241 837.8 532 77.6
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.0e-240 836.6 532 78.9
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.8e-240 835.9 534 77.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.8e-240 835.9 527 78.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.3e-240 835.5 532 77.6
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.3e-240 835.5 532 78.8
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.3e-240 835.5 532 78.0
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 3.0e-240 835.1 533 78.4
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 3.0e-240 835.1 532 77.6
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 3.9e-240 834.7 546 76.7
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.1e-239 833.2 533 78.2
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 4.4e-239 831.2 531 78.3
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 7.4e-239 830.5 533 77.9
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.4e-239 830.5 532 77.8
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 9.7e-239 830.1 532 78.0
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.3e-238 829.7 534 77.2
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.2e-238 828.9 531 78.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.2e-238 828.9 532 77.8
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.8e-238 827.8 532 78.0
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 4.8e-238 827.8 531 77.4
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.3e-238 827.4 532 77.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.3e-238 827.4 532 77.4
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 6.3e-238 827.4 527 77.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 8.2e-238 827.0 532 77.3
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-237 826.6 533 77.3
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.8e-237 825.9 532 78.0
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.4e-237 825.5 528 77.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.6e-236 822.0 532 78.2
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.4e-236 821.6 532 77.4
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.5e-236 821.2 546 76.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 7.7e-236 820.5 533 76.9
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.7e-235 819.3 530 76.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 3.8e-235 818.1 533 76.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 3.8e-235 818.1 525 77.3
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 3.8e-235 818.1 535 77.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 5.0e-235 817.8 537 76.4
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 6.5e-235 817.4 532 76.7
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 8.5e-235 817.0 518 77.2
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-234 816.6 526 77.0
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.1e-234 816.6 531 77.2
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.1e-234 816.6 531 77.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.1e-234 816.6 531 76.5
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.4e-234 816.2 534 76.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.5e-234 815.5 531 76.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 5.5e-234 814.3 534 75.5
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 7.2e-234 813.9 531 76.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 7.2e-234 813.9 528 76.9
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.2e-233 813.1 528 76.9
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.6e-233 812.8 534 76.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.1e-233 812.4 531 76.1
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 2.1e-233 812.4 535 77.2
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 3.6e-233 811.6 528 76.1
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.0e-232 810.1 525 77.0
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.0e-232 810.1 528 76.7
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.0e-232 810.1 525 77.7
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 3.0e-232 808.5 528 76.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.9e-232 808.1 531 75.5
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 5.2e-232 807.7 532 76.1
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.3e-231 805.1 531 75.7
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.4e-231 804.7 528 75.9
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.4e-231 804.7 528 75.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 5.7e-231 804.3 536 75.0
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 7.4e-231 803.9 527 75.5
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 1.3e-230 803.1 532 75.2
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.2e-230 802.4 531 75.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.8e-230 801.2 531 75.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.1e-229 800.0 530 75.1
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.1e-229 800.0 534 74.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.1e-229 798.1 531 75.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 4.1e-229 798.1 532 75.2
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 7.0e-229 797.3 529 75.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.2e-224 781.2 523 74.6
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.0e-219 766.9 525 73.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 2.1e-217 759.2 524 72.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.3e-214 747.3 526 71.7
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 8.3e-214 747.3 476 78.8
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-213 746.9 472 77.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-213 746.5 530 71.3
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-212 743.4 482 76.3
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 6.5e-211 737.6 530 70.4
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 2.1e-209 732.6 479 76.6
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.8e-209 732.3 483 76.2
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.5e-202 709.9 479 75.6
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.4e-200 703.4 478 74.5
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 2.0e-199 699.5 526 66.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 7.3e-194 681.0 524 66.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 6.2e-193 677.9 421 80.3
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.8e-192 676.4 525 63.8
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.4e-189 666.8 530 66.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 8.1e-185 651.0 534 65.0
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 4.0e-184 648.7 443 72.9
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.1e-181 640.6 421 76.5
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.3e-179 632.9 508 65.6
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 8.4e-174 614.4 546 59.0
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.3e-171 607.1 532 61.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.4e-168 597.0 421 72.2
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 4.3e-162 575.5 429 69.2
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.8e-160 570.1 499 63.7
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.8e-155 553.5 420 68.3
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 5.6e-154 548.5 370 73.5
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 3.5e-148 529.3 546 50.7
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.2e-133 479.2 278 85.3
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 8.5e-118 428.3 257 81.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.7e-116 423.3 507 48.3
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 5.0e-110 402.5 250 77.6
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.2e-105 387.1 341 60.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 6.3e-105 385.6 280 68.9
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-103 380.9 254 74.8
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 7.7e-103 378.6 472 47.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.8e-102 376.3 250 72.0
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.6e-100 370.9 519 44.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 9.8e-98 361.7 314 64.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.0e-92 342.0 262 66.4
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.2e-88 328.6 336 54.8
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.3e-86 324.7 262 63.4
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.0e-82 310.8 256 65.6
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 3.1e-59 233.8 159 72.3
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.6e-58 230.7 272 50.0
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 2.4e-56 224.2 147 71.4
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 9.6e-53 212.2 325 42.8
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.8e-49 200.3 146 67.1
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.0e-46 192.2 103 88.3
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.1e-44 184.5 96 89.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.8e-44 183.3 104 84.6
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 9.9e-42 175.6 163 61.3
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-39 168.3 106 73.6
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.3e-33 148.7 161 52.2
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.4e-32 145.2 155 51.6
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 5.1e-30 136.7 79 78.5
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.5e-29 134.4 87 78.2
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 9.0e-27 125.9 85 71.8
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 1.0e-17 95.9 93 54.8
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.1e-16 92.4 73 67.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.8e-14 85.1 61 73.8
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.4e-10 70.9 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.3e-09 68.9 51 66.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.4e-08 65.5 47 66.0
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 4.2e-08 63.9 30 90.0
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 6.1e-07 60.1 38 78.9


User provided reference genes

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