Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.5e-170 602.8 316 100.0
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.6e-82 309.7 345 56.2
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 9.3e-80 301.2 339 54.3
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.5e-79 299.3 339 53.7
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.2e-71 274.2 350 50.6
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 7.4e-61 238.4 364 44.8
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.8e-60 235.7 372 43.5
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 2.4e-59 233.4 367 43.3
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 3.4e-58 229.6 362 44.8
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 7.6e-58 228.4 362 45.9
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 7.6e-58 228.4 346 46.8
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.3e-57 227.6 361 43.8
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.9e-57 226.5 361 42.9
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 6.5e-57 225.3 356 44.7
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 6.5e-57 225.3 363 42.4
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 8.4e-57 224.9 377 42.7
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.1e-56 224.6 314 48.7
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 1.1e-56 224.6 396 40.9
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 1.9e-56 223.8 369 42.0
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 3.2e-56 223.0 361 43.2
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 5.5e-56 222.2 375 43.2
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 1.6e-55 220.7 358 43.3
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 7.9e-55 218.4 368 42.7
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.3e-54 217.6 359 42.6
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 5.1e-54 215.7 376 42.3
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 8.7e-54 214.9 364 42.0
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.5e-53 214.2 364 42.9
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 1.9e-53 213.8 362 44.2
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 1.9e-53 213.8 370 43.2
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 2.5e-53 213.4 414 39.6
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 2.5e-53 213.4 376 43.1
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 4.3e-53 212.6 368 43.5
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 7.4e-53 211.8 366 41.8
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.3e-52 211.1 359 42.9
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.3e-52 211.1 364 42.9
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.6e-52 210.7 362 41.4
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-52 208.8 359 41.2
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 6.3e-52 208.8 376 42.0
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.1e-51 208.0 358 43.9
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 2.4e-51 206.8 359 40.4
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 2.4e-51 206.8 360 41.4
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 2.4e-51 206.8 367 41.4
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 4.1e-51 206.1 360 41.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 6.9e-51 205.3 353 42.5
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 6.9e-51 205.3 363 40.8
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 6.9e-51 205.3 356 40.4
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 9.0e-51 204.9 358 43.6
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.2e-50 204.5 358 43.6
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 2.0e-50 203.8 360 42.5
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 4.5e-50 202.6 358 41.3
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-49 201.1 349 43.0
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.2e-49 200.3 349 42.7
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 2.2e-49 200.3 359 41.2
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.9e-49 199.9 382 38.7
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 6.5e-49 198.7 375 41.1
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.1e-48 198.0 357 42.0
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 4.2e-48 196.1 353 41.4
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 7.2e-48 195.3 341 40.5
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 9.4e-48 194.9 356 39.3
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.3e-46 190.3 346 39.9
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 6.7e-46 188.7 355 38.3
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 1.5e-45 187.6 356 38.8
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.5e-45 187.6 362 39.8
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.0e-45 187.2 360 39.2
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 2.0e-45 187.2 365 39.2
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.5e-45 186.8 372 39.8
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 9.7e-45 184.9 365 38.1
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 9.7e-45 184.9 359 38.7
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.3e-44 184.5 361 36.6
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 3.7e-44 183.0 360 39.2
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 3.7e-44 183.0 365 38.4
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 3.7e-44 183.0 359 38.4
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 4.8e-44 182.6 363 38.6
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 6.3e-44 182.2 356 39.6
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 8.2e-44 181.8 360 38.1
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.1e-43 181.4 325 40.3
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 3.1e-43 179.9 361 38.8
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 1.5e-42 177.6 366 37.7
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.5e-42 177.6 366 38.3
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 2.6e-42 176.8 364 38.7
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 5.9e-42 175.6 361 38.8
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 7.7e-42 175.3 364 37.4
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 1.3e-41 174.5 363 37.2
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 1.3e-41 174.5 360 38.6
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 8.5e-41 171.8 350 39.4
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.1e-40 171.4 366 40.2
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.4e-40 171.0 358 38.3
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 2.5e-40 170.2 342 39.5
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.2e-39 167.9 366 36.1
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 7.9e-39 165.2 371 38.0
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 5.1e-38 162.5 354 38.4
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.5e-37 161.0 452 33.4
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 2.4e-35 153.7 368 36.4
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.7e-33 147.5 361 37.7
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.7e-33 147.5 368 33.7
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 1.6e-31 141.0 317 38.5
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 2.1e-31 140.6 303 37.6
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 3.3e-29 133.3 182 47.3
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 4.8e-28 129.4 374 32.4
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 2.0e-26 124.0 382 31.9
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.0e-26 124.0 291 35.7
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 2.6e-26 123.6 342 32.7
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 8.5e-25 118.6 219 38.4
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.9e-24 117.5 292 33.9
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.8e-22 110.9 236 37.7
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 4.8e-20 102.8 126 46.0
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.4e-19 100.5 398 29.9
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 2.9e-17 93.6 302 30.8
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 2.5e-16 90.5 59 79.7
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 2.5e-16 90.5 59 79.7
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 2.1e-15 87.4 150 43.3
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 6.1e-15 85.9 368 28.8
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 2.3e-14 84.0 154 38.3
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 3.4e-13 80.1 43 79.1
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 8.3e-12 75.5 364 25.5
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 2.4e-11 73.9 181 35.9
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 7.0e-11 72.4 119 42.0
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 7.0e-11 72.4 119 42.0
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.0e-09 68.6 45 66.7
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 6.1e-07 59.3 49 59.2


User provided reference genes

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